Pungitius pungitius (ninespine stickleback): 119218524
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Entry
119218524 CDS
T07626
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119218524 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119218524 (exosc1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119218524 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
119218524 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
SPK
Motif
Other DBs
NCBI-GeneID:
119218524
NCBI-ProteinID:
XP_037328926
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All DBs
Position
9:complement(172936..175737)
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AA seq
194 aa
AA seq
DB search
MSPMKLCVPGDKLCSVESCIPGTGVYQRHGYIYSSLAGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVQILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRLGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGGQMVPISWCEMQCPRTHSKE
FRKVARVQPEYLHA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtctccaatgaagctgtgtgttcctggtgacaagctgtgcagtgtggagagctgcatc
cccggcacaggagtttatcagcggcacggctacatttactcctcactagcaggctacgtg
ctgaagaagaatgagggggaggagttaccagtgatctctgtggtgcgggaaacagaaaca
caactactacccgatgtaggagcaatagtcacctgtaaggtgacaagtatcaaccccagg
ttcgccaaggttcagatcctttatgtgggatccacgccgctgaaggaccgcttcagagga
acaattaggaaagaagatgtgcgtgcgacagagaaggacaaggtggaaacgtacaaaagc
ttcagacttggggacatcgtcttggcgaaagttatttctcttggtgatgttcagtcaaac
tacttgttgacaacagcagagaatgaacttggggtggtggtggcacacagtgaagcaggt
ggccagatggttcccatcagctggtgtgagatgcagtgtccacggacgcacagcaaggag
ttccgcaaagtggcgcgagtgcagccggagtacctgcacgcatga
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