KEGG   Pungitius pungitius (ninespine stickleback): 119218576
Entry
119218576         CDS       T07626                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1-like
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppug03041]
    119218576
Spliceosome [BR:ppug03041]
 Complex B
  Other components
   Complex B specific factors
    119218576
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR3_2nd EIF3I Beta-prop_EML ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WDR90_beta-prop_4th WD40_Gbeta LisH_TPL Beta-prop_HPS5 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_RIG_2nd Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_NUP159_NUP214 Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F DUF7899 Beta-prop_ELP1_2nd Beta-prop_WDR11_2nd Beta-prop_IFT122_2nd VPS8_N LisH
Other DBs
NCBI-GeneID: 119218576
NCBI-ProteinID: XP_037329004
LinkDB
Position
9:11834469..11841094
AA seq 568 aa
MYENCRNLERASFYKRRPIRMRCAGHSVNTCSGFAFSSAEPSRQSVQCVAAAGGCISMAT
EMEPSDVIRLIMQYLKENNLYRTLTTLQEETTVSLNTVESIDSFVADIKSGHWDAVLLAI
KSLKLPDNTLIDLYEQVVMELIEMREVGAARSLLRQTDPMIMLKQTQPQRYIHLDKMLTC
SYFDPCEAYPGGSSKEKRRRAIAEALVREVSVVPPSRLMALLDQVGSMRIQQYPDQLPTD
MTIETSGNKDRGMEKESFPTQLYRHIKFGRRSHVECACFSPDGKYLITGSVDGFIEVWNF
KTGKISKDLKYQAHDSFMMMDGAVLCMCFSKDTDLLATGAQNGKIKVWRIQSGSCLCRFE
HAHNKGVTCVSFSKDNNQILSASYNQTIRIHELRSGKTLKELKSHSSFVNDAFFTQDGLH
IISASSDGTVKIWNTTSCQCIHTFKSVSRTSDDPVNNVIPLPQNPEHFVICNHSDTVVIM
DMDGQTVKTFSSDQKQRADFVCCTLSPCGGWIYCVGEDFVLYCFEYATGKLQKTLTVHEK
DVIGIAHHPHEDLIATYSEDGLLRLWKP
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgtacgaaaactgcaggaatttagaacgtgcatcattttacaaacggcgccccatacga
atgagatgcgcggggcacagtgtgaacacgtgtagtgggttcgcctttagcagcgccgag
cccagccgtcagtcagtccagtgtgtggcggcagcaggaggctgcatcagcatggctacg
gagatggagccctcggatgtgatccgcctcattatgcagtaccttaaggagaacaacctc
taccgaacactgaccaccttacaggaggagacaactgtctcgctcaacacagtggaaagc
atcgacagcttcgtcgcagatatcaagagcggccactgggacgccgtcctgctcgctatc
aagtccctcaagttgcccgacaacacacttatcgacctttacgagcaggtcgtgatggag
ctcattgaaatgagggaggtgggagccgctcgctcactcctcagacaaaccgacccgatg
atcatgttgaagcagacgcagccgcagaggtacatccacctggataagatgctgacgtgc
tcctactttgacccctgtgaggcgtacccggggggcagcagcaaagagaagcggcggcgg
gcgatcgccgaggccttggtgagggaggtcagcgtggtgccaccttctcgcctcatggcg
ctcctggatcaagttggctctatgagaatacaacagtatccagatcagctccccacggac
atgaccatagaaacatccggcaacaaagacagaggaatggagaaggagagctttccaacg
caactgtaccgccacatcaagtttgggcggcggtcacacgtggagtgtgcttgtttctct
cccgatgggaaatacttaatcaccggatcggtggacgggttcatcgaagtctggaacttt
aagaccggaaaaatcagtaaggatttaaagtaccaggcccacgacagcttcatgatgatg
gatggtgctgtgctgtgtatgtgcttcagtaaggacacagatctattagcaacaggagct
cagaatggcaaaataaaggtctggaggattcagagcggctcgtgcctttgcaggttcgag
cacgctcacaacaaaggtgtgacctgtgtgagcttctcaaaggacaacaaccagatcctc
agtgcctcttataaccagactatcagaattcacgagctgaggtcaggaaagacattgaag
gagttgaagagccactcgtcgtttgtaaacgatgcatttttcactcaagacggacttcac
atcatcagcgcgtcatccgatggcacagtgaagatttggaacacaacatcgtgccagtgc
atccacacgttcaaatccgtctcccggacctcagacgaccccgtcaacaatgtgattcct
ctcccccaaaacccggagcactttgtgatttgcaatcactcggacacagtggtcatcatg
gacatggacggtcagaccgtgaagaccttcagctcggaccagaagcaaagggccgatttc
gtgtgctgcaccctgtcgccctgcggggggtggatttattgtgtgggagaggactttgtt
ctgtactgcttcgagtacgcgacgggaaagctgcagaaaacactgaccgttcacgagaag
gatgtaattggcatcgctcaccacccacacgaggatctgatcgccacgtacagcgaggac
ggcctcctgaggctgtggaagccttga

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