Pungitius pungitius (ninespine stickleback): 119218652
Help
Entry
119218652 CDS
T07626
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119218652 (pdcd11)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
90S particles
Other 90S particles
119218652 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
Suf
TPR_19
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_CcmH_CycH
ARM_TT21
TPR_16
PPR
Babuvirus_MP
ARM_TT21_5th
TPR_7
Motif
Other DBs
NCBI-GeneID:
119218652
NCBI-ProteinID:
XP_037329147
LinkDB
All DBs
Position
9:9712129..9724229
Genome browser
AA seq
1813 aa
AA seq
DB search
MASVEEDFPRGGTAKKPTESKTKVERTEVDNLFQSNEQAETKKRKGAAKDADKKFKKPKT
GKGDRGLTLNAEAKCVEILHIKNLKEGTLMLGCVKDVTDFEVTVGLPCGMEGFLSIMNIS
DSYTKLLSEQLDSADTEEICSLQHLFYPGMVLRCILAKLDVGKQGSLSFQLSINPKLVNK
ALSSSTLKAGMALSGCVESVEDHGYIVDIGINGTNAFLPKNVRENFPEELKVGQYLTCQV
ERVKNEGRVVHLSVSPPTAARVCAESQQGWNLTNLLPGLLVKATIKKVTKHGLILEFLSS
FTGQVDFLHMEPEQTRSYTEGNEVQACVLYVEPSTRLVGLSLRSFLVQPGARLQHAPAGG
ERIGEVVKACKMVAMHHMSGAMVELPDKTLAFVHRNHLKEPNEPSNENRVLGMTEHTCRI
LNFSPIDQIHFVSVRKSVVEKRFHRYHDIQAGQLVEGTVSVLIGHGMVVHLSGHIKGLVP
RTHLSDIILKNPEKKYTQGMRIKCRVLSVDADKKNLYLTRKKALVESALPLFLSYTDARP
GLVSHGYIVCIKDFGCIVRFYNDVKGLVPLKELSSQPIINPEEIFYVGQVLKAKVLQCNP
DKAKLVLSFKAAAEGDMEEVANPQFDCEVGQRLEARIQKKSATGLEVAILPDEIRAVIPT
MHLSDHLSNCPLLLESMQEGDTISNLICFSRNKQNIAISKKPTVRWSLEQGVFAKDFSEV
TVGMQLIGWIKNLMPYGVFVEFPNGLVGLAPNSALADKFISNAAIAFQPGQTVMAKVTNL
DVEKRRFLVTLKISEVICPEGDAQTRLINGLQERRAVTEMLAMRENSDLLQQLASLIVGQ
KLKLTVDTVDSGARFKSDDLVGATITATKDQVMGVELTLGQKVTAVILHIDILSRCVHVS
ILPTLVAKKKSLAEGLKYAAIVQHINQDFATISLGDTAQLTVIQTSCHLNEAFPSESDQL
KAGMSLSVEVIEASCQELQGLALVSWVFGSPKQQAATFKNWERSRGHCFGDIVRGKVQTV
KPASIQVTLEDGSTGSVHVSEVMEVAKVPLGSFPTSTVKVGSEITARVIGGREVSSHRFL
PFSHPKFKYNIPELTLIPSKLDENKDFKPVSAKEKINGYTVGEEIKCFVSKFNPKKKTLE
VTTHPCVTMTVDLLGIITDPKYSSHPEKLYKIGQAVLAKVVDVTSGPQRCTLSLTGVHQL
ETGSVTLGMVTNSHPQFGVQMKLPFGNLGTAAVTDLRDAYKPNPLAGYSKDQLLRCFLLG
KENGTWQLSLRLSRLNPEQSKPVKDPEVLSVDHLRAGQVIRGYVKSVSEHGVFIRLSMSI
TGRAQLQQCTKYSVKDHKVLSEHLPPNTLLTTKICSIDKEEGLVYLSLLPEDTGKPDVLP
ETLGLQLRPVGEKRTYDSKTTTCDSKKKKRTASESVQKQLESQITKKAKKAKTDDNDSGV
EVYFREEEDKRDKEPKSDSVKKVTPSPAGPSRLQVAAGFSWDAHLSSLKPALAAQEGESS
DGEDQDESKKPQKKSRHELQQEKKAAEKALVQRETELMDPSLRPQDAAAFERLLLASPNS
SLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGSEESLK
KVFERALQFCEPMPVYQQLADIYAKCNKTKEAEGLYKTMVRRFRQNKAVWLSYGAFLLQQ
GQSDGASVLLQRALKSLPTKESVDVIAKFAQLEFRYGDPEKGRTMFDKVLTSYPKRTDLW
SVFLDLVFKHGSQKEVRALFDRVIALSVSVKKIKFFFKRYLEYEKKHGTPQTIQAVKEKA
VEFVEAKGNKAAN
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtggaggaagacttccctcgaggaggaacggcaaagaagcccaccgagagt
aaaaccaaggtggagcggacagaagtggacaacttattccagtcgaacgaacaagccgaa
actaagaaaagaaaaggggcggccaaagatgccgacaagaagttcaagaagccaaagacg
ggcaaaggcgatcgaggcctgacgctgaatgcagaagccaagtgtgtggaaattctacac
atcaagaatttgaaggagggcaccctgatgctgggctgtgtgaaggatgtaacagacttt
gaggtgaccgtcggtctgccctgcggcatggaaggcttcctcagcatcatgaacatctct
gactcctacaccaagctgctcagcgagcaattggattcagctgatacagaggagatctgc
tctctacaacatctcttctaccctggcatggtgttacggtgtatccttgccaagttggat
gtaggcaaacaaggctctctcagcttccagctgtcaatcaatccaaagctggtcaacaag
gctctctcctccagcactctgaaagctggcatggcgttgagtggctgtgtggagagtgtg
gaggatcatggctacatagttgacattggcatcaatggaaccaacgccttcctgcccaag
aacgtgcgggaaaacttcccggaagagctgaaagtgggtcagtatttgacttgtcaagtg
gaaagagtgaagaacgaggggcgcgtggtccacctttctgtcagccctccgaccgccgcc
cgggtctgtgctgaatcccagcagggctggaacctcaccaacctgctgcccggccttctg
gtcaaagctacaatcaaaaaggtgaccaaacatggtctgatcctggagttcctgtcctcc
tttactggccaggtggactttctccacatggagccagagcagacacgcagctacacggaa
ggaaatgaggtgcaagcttgtgtgctgtatgtggagccgtccacccgtctggtgggcctc
agcctgcgcagcttcctggtccagcccggggccagactccagcacgctccggccgggggc
gagcgcatcggcgaggtggtgaaggcctgcaagatggttgcaatgcaccacatgtctgga
gccatggtggaactgccagacaaaactttggcctttgtacataggaaccacctaaaggag
cctaatgagccttctaatgaaaaccgagtgctggggatgactgagcacacctgcaggata
ctgaacttcagccccatcgaccaaatccatttcgttagtgtgcggaagagtgtggtggaa
aagcgttttcatcgctatcatgatattcaggccggtcagcttgtagaggggacagtgtca
gtcctgattgggcacggcatggtggtgcacctgtctggccacattaagggcctggtgccc
cggactcacctgtccgacatcatcctcaagaacccagagaagaagtacacgcagggcatg
aggataaaatgccgggtgctgtccgtagatgcagacaagaagaacctttacctgaccaga
aagaaggctctggttgaaagcgccctgccgttgttcctcagctataccgatgcccgtcct
ggcctcgtgtcccacggctacattgtctgcatcaaggactttggctgcattgtccgtttc
tacaacgacgtcaaaggtctggtgccgctcaaagagctcagctctcagccaatcatcaat
cctgaggagatcttctatgtggggcaggtgttaaaggctaaagttcttcagtgtaacccc
gataaggccaagctggtgctgtcgtttaaggccgcggcagagggagacatggaggaagtt
gcaaatccccaatttgactgtgaagtggggcaaaggctggaggctagaatacagaagaag
tccgccaccggtctggaagtggccatcctccccgatgagatccgagccgtaatacccaca
atgcacctttctgatcacctgtctaactgcccactgctgttggagagcatgcaggaggga
gacaccatctccaacctcatctgcttcagcaggaacaaacagaatattgcgatctccaag
aaaccaacagtgagatggtcgctggagcaaggagtgtttgccaaggacttctctgaagtc
actgtgggaatgcagctgattggctggatcaagaacctcatgccttatggtgtcttcgta
gagttcccaaacggccttgttggtcttgctcctaactctgccttggcagacaagttcatc
agcaatgcagcaatcgcctttcaaccgggtcaaacggtaatggccaaagtgaccaacctg
gatgtagaaaagcggcgtttcttggtcacgctgaagatttcggaggtcatatgtccggag
ggcgatgcccagacgagactcattaacggcctgcaggagagaagagctgtgactgaaatg
ttagccatgagagagaacagtgaccttctccagcagctggcttccctgattgtgggtcag
aagctgaagttgactgtggacactgtggacagcggtgcccgctttaagtctgacgatttg
gtcggtgcgaccataacagccaccaaggaccaggttatgggtgttgagttgaccttaggt
cagaaggttactgcggtcatcctccacattgacatcctgtcacgctgtgtccatgtgtcc
atcctacccacgctggtggcaaagaagaaatctttggctgaaggattgaagtatgcagcg
atagtgcagcacatcaaccaggactttgccaccatctcactcggtgacacggcacagctg
accgtgatccagaccagctgccacctgaacgaggcgtttccgtccgagtcggaccagctg
aaggcgggaatgagcctgtctgtcgaggtcatagaagccagctgccaggaactgcagggg
ctcgccctggtgtcgtgggtgttcggttcaccaaaacagcaagctgccaccttcaaaaac
tgggagcgctcgaggggccactgcttcggggacattgtgcgtggcaaagtgcagacggtg
aagcccgcctccatacaggtcactctagaggacggcagcacgggcagcgtgcatgtgtcc
gaggtgatggaggtggcaaaagtgcctctaggatccttccccacgtccacagttaaagtg
gggagtgagatcaccgctagggtcatcgggggacgcgaagtctccagccacagattcttg
ccgttttcccaccccaaatttaaatacaacatccctgagctcacacttataccaagcaaa
ctggatgagaacaaagatttcaaacctgtttcagcgaaagagaaaataaacggctatacg
gtcggggaagaaattaaatgctttgtatcaaagttcaatccaaagaagaagactttggaa
gtcaccacacatccttgtgttactatgacagtcgacctgctgggaatcatcacagaccca
aagtattcaagccacccggagaaactgtacaagattggccaagcagtccttgccaaagtg
gtagacgtgacctccggaccacagcgttgcacactgtcactcacaggtgtccaccagctt
gagacgggcagcgtgactttgggaatggtcactaatagtcacccacaatttggcgtccag
atgaaacttccctttggcaacctgggaacagctgctgtgactgacctgcgtgatgcctac
aagccaaatccgttggccgggtacagcaaggatcaactgctgaggtgtttcctccttggt
aaggaaaatggcacgtggcagttatctctacgtctatcaaggctgaacccagagcagagc
aaaccagtgaaggacccagaagttttatctgtagaccacctgagagccggccaggtcatc
agaggctacgtcaagtctgtgagcgagcacggggtcttcatcaggttgtcgatgagcatc
acaggaagagcccaactccagcagtgcaccaagtactctgtcaaagaccacaaggttctc
tctgagcacctgcctcccaacaccctgctcactaccaagatctgcagtattgacaaagag
gaggggttggtctacctctctctgctcccagaggacacggggaagccagacgtccttcca
gagactctcgggctgcagctgcgtcctgtgggagagaagaggacgtatgattctaagacg
accacatgtgactctaagaagaagaaacgcacagcgtctgagagtgtgcagaagcaatta
gagtcccagatcacaaagaaggcaaagaaagcaaagactgatgacaatgacagcggagta
gaggtgtacttccgagaagaggaggataagagagacaaagaacccaaatctgattctgtg
aagaaggtgacacccagcccagctggtccatccagactgcaggtggcagcaggtttctct
tgggacgctcacctgagctccttgaagcctgccttggcagcacaggagggcgaatccagt
gacggagaggaccaagacgaaagcaagaagccacagaaaaaatctcgccacgagcttcag
caagagaaaaaggcggcagagaaggccctggtacagcgggagaccgagctgatggatccg
agcctgcggcctcaggatgctgccgcctttgagcgcctgctcctcgcttcacccaacagc
tcactgctctggctccaatatatggctcaccatctgcaggccacccagatcgagcaggcc
cgcgctgtggccgagagggccctgaagaccatctcctttagggaggagcaggagaagctg
aacgtgtgggtggccctgctgaacctggagaacatgtacggctcagaggagagcctgaag
aaagtgtttgagcgcgcgctgcagttctgcgagcccatgcccgtgtaccagcagctggct
gacatctacgcaaagtgcaacaagaccaaggaggctgagggcctgtataagacgatggtg
aggcgtttccgtcagaataaggctgtgtggctgagctacggggccttcctgctgcagcag
ggtcagagcgacggcgccagtgttctcctgcagagggcactgaagagtctgcctaccaaa
gagagtgtagatgtgatcgccaagtttgcacagctggagttccggtacggtgatccagag
aagggtcgcaccatgttcgacaaagtcctgacgagctacccgaaacgcacggacctgtgg
tcagttttcctcgacctcgtgttcaaacatggctcacagaaggaagtccgggcgctgttt
gatcgtgtgatcgccctgagtgtctcagtgaaaaagatcaagttcttcttcaagcgctat
ttggagtacgagaagaagcacggcaccccgcagaccatccaggcagtcaaagagaaggct
gtggagtttgtggaagcgaaaggaaacaaggctgccaactaa
DBGET
integrated database retrieval system
