Pungitius pungitius (ninespine stickleback): 119218653
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Entry
119218653 CDS
T07626
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119218653 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119218653 (taf5)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119218653 (taf5)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119218653 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
119218653 (taf5)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
119218653 (taf5)
STAGA complex
119218653 (taf5)
TFTC complex
119218653 (taf5)
SAGA complex
119218653 (taf5)
SLIK complex
119218653 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_Nup120_160
WD_LRWD1
CDK5RAP3
VPS8_N
LisH_TPL
Motif
Other DBs
NCBI-GeneID:
119218653
NCBI-ProteinID:
XP_037329150
LinkDB
All DBs
Position
9:9705604..9710697
Genome browser
AA seq
750 aa
AA seq
DB search
MAAVQGGPVDAVEEKDIKTEPSNDGSGSNSTNDGRAASTSPGSGAPAACTKPATAAPEDQ
QTLLAVLQFLKKNKLIESVDILRREAGLPEDSLDLKGGDSSGAGSGGGAAAGAASDAADA
SSLLSRVTASSAAVAQAPTKAAGEDQPDVNVVLSAYSQQGDPKLYPVYYNGLKRFIESVL
DCHRAELSQVFYPLFVHMYLELVYNNYESEARAFFEKFRGDQECYYEDDLRVLSSLSKRE
HMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSK
SQIDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDS
VGSKSKKQDPNAPQPTRIPLPELKDSDKLDKIMYMKEATKRIRLGPENLPSICFYSFLNA
YQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMD
EKTASELKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW
DTHFSPHGYYFVSGGHDRVARLWATDHYQPLRIFSGHLADVTCTRFHPNSNYVATGSSDR
TIRLWDVLNGSCVRIFTGHKGPIHALAFSPNGKFLASGATDSRVLLWDIGHGLMIGELKG
HTDSIYSLRFSRDGEILASGSMDNTVRLWNATKAFDDLETDDFTAATGHVHLQDNSQELL
LGTYMSKSTPVINLHFTRRNLLLAAGSYNP
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtccggtagacgcggttgaagaaaaagacataaaaaccgaa
ccatcgaacgatggctctggaagtaacagtacaaacgacggcagagcggcctctacgtcc
cccggttccggggcgccggccgcatgcaccaaacccgcgaccgcagcgccggaggaccag
cagacgctgctggcggtcctgcaattcctcaaaaagaacaaactgatcgagtccgtggac
attttacgtcgcgaagcgggattgccggaggattcactcgatctgaaagggggggactct
tccggagcgggttcgggtggtggtgctgctgctggtgctgcaagcgacgccgcggatgcg
agctctcttctcagccgtgtgaccgcctcatccgccgctgtcgctcaggcgccaactaaa
gctgctggggaggaccagcccgacgtcaatgtggtgctgtcagcttacagccagcaggga
gacccaaagctgtacccggtttactacaacggcctgaaaaggttcatagaatcggttttg
gactgtcaccgggcagagctgtcccaggtcttctacccgctgtttgtgcacatgtacctg
gaactggtgtacaacaattacgaaagtgaggccagggcgttctttgaaaagttccgcggc
gatcaggagtgttactacgaggacgacttgcgcgttttgtccagcctttccaagcgggag
cacatgagaggcaacgagaccctgctggacttccgcaccagcaagtttgtcctacgcatc
tcccgagactcttaccagctgcttaagaggcacctgcaggagcgccagaacaaccagatc
tggaacatcatacaagagcatctctacatcgacatcttcgatggcatgccgcgcagcaag
agccagatcgacgcaatgtccggcagcctggccggagaggccaaacgagaggccaacaag
gctaaggtttactacggactgctgaaggaaccggaaatcgagctgcctcttgatgatgag
gatgaagaggcagagaatgaggagggtaaacccaagaagaagaaacccaaaaaggacagc
gtgggctcaaagagcaagaaacaagaccccaatgcacctcaaccgactaggatccctctt
ccagaactgaaggattcagacaagctggacaagatcatgtacatgaaggaggcgaccaag
aggatccgcctgggaccagaaaaccttccctccatctgcttctactcttttctcaacgca
taccagggtctgactgcagtggacttcacggatgattccagcctgatcgcaggaggcttc
gctgactccacagtgcgggtgtggagtgtcacaccgaaaaaactccgcaaggtcaagtct
gcagcagacttgaatctgattgacaaagagtcggacgatgtgctggagaggatcatggat
gagaagacggccagcgagcttaagatcctctatggacacagtggcccggtgtatggcatc
agcttcagcccggacagaaactacttgctatcaagttctgaagatggtacagtcaggctg
tggagcctccaaacattcacttgtctggtgggctacaaaggtcacaactacccagtgtgg
gacacccacttttccccccatgggtactattttgtctctgggggacatgacagagttgcc
cgtctctgggcaacagatcactaccagcctctgaggatattttctggtcacctcgctgat
gtgacctgcacccgcttccacccaaactccaattacgtggctaccggttcttctgaccgc
accatccgactgtgggatgtcctgaacggaagctgtgtgcgcatcttcaccggtcacaag
ggtcccatccacgcgctggccttctcccccaatggaaagttcttggcttcaggagccact
gatagcagagttcttctgtgggacattggtcatgggctaatgattggagagctcaaaggc
cacacggactccatctactccctccggttcagcagagacggagagatcctggcctccggc
tcaatggacaacacggttcgtctgtggaacgctacgaaagcatttgatgatttagagacg
gatgacttcacagcagctacaggacacgtccatctacaagataactcccaggagcttctg
ctgggaacctacatgtccaaatccacacctgtcataaaccttcacttcacccgcagaaac
ctgcttttggctgctggttcctacaatccatga
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