KEGG   Pungitius pungitius (ninespine stickleback): 119218658
Entry
119218658         CDS       T07626                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018  RNA degradation
ppug03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119218658 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119218658 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppug03019]
    119218658 (lsm6)
   03041 Spliceosome [BR:ppug03041]
    119218658 (lsm6)
Messenger RNA biogenesis [BR:ppug03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     119218658 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     119218658 (lsm6)
Spliceosome [BR:ppug03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    119218658 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 119218658
NCBI-ProteinID: XP_037329156
LinkDB
Position
9:16184241..16186231
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKA
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctgagaaaacaaaccccgagcgactttctgaagcagataatcgggagacctgtg
gtggtcaaactgaactctggtgtcgattacagaggtgtcctggcctgcctcgatggttac
atgaacattgccatagagcaaaccgaggagtatgtgaatgggcagctcaagaacaagtac
ggagatgcttttctaagaggaaacaatgtcctctacatcagcacccagaagaggaaagca
tag

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