Pungitius pungitius (ninespine stickleback): 119218891
Help
Entry
119218891 CDS
T07626
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119218891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119218891
03036 Chromosome and associated proteins [BR:
ppug03036
]
119218891
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119218891
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119218891
mRNA degradation factors
5'-3' decay
Decapping complex
119218891
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119218891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
119218891
NCBI-ProteinID:
XP_037329560
LinkDB
All DBs
Position
17:complement(2380049..2388330)
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGPTKPASVQLAPTTHGKALGAAKIAGGAAQDGGGIK
FGDDWKKSLKLPPRDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKNHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQIMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHTSGTDCDVEEIEE
KPGRQQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccagaacagaaaacgttggcccagttgtcatgggactgaacaagcagaac
gggcagctcagaggaccgactaaacccgcttcagtccagctagcacccacaactcatgga
aaggctttgggtgcagccaagatagcaggtggtgctgctcaggatggaggaggcatcaag
tttggggacgattggaaaaagagcctaaagctcccacccagagacaacagggtcaaaacc
tcagatgtcacgtccaccaaggggaatgagtttgaagattactgtctcaaaagggaactc
ctgatgggcatatttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgcgctgtccggacgggatattctggctcgagctaagaacggaacggggaaaagt
ggagcctatctcatcccactgctggagagaatagacctgaaaaagaaccacatacaagca
cttgtcatggtgcccacccgtgagctggctctgcaagtgagccagatctccatccagatc
agcaaacacctgggtggagtcaaagtcatggccaccaccgggggcaccaacctacgggat
gacatcatgcgtctggatgagaccgtgcatgttgtcattgcaacgcctggtaggatcctg
gacttgataaagaagggagtggcaaaggtggatagagtccagatcatggtgatggatgag
gccgacaagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttccctatcagcgtgcagaagttc
atggccaagcatcttcagaaaccctacgagatcaacctgatggaggagctgactctgaag
ggaatcacacaatactatgcctacgtcacagagaggcagaaagtccactgcctaaacaca
cttttttccaggcttcagatcaaccagtcaattatcttttgtaactccacccaaagggtg
gagcttttggccaagaagatcactcagctgggctactcctgcttctacatccacgccaag
atgatgcaggaatacagaaaccgtgtgtttcatgacttcagaaatgggctgtgcagaaac
ctggtctgcacagatctcttcaccaggggcatcgatatccaggctgtcaacgtcgtcata
aactttgactttcccaagaatgctgagacttacctccatcgtattggaagatcagggagg
tttggtcatctgggcctggccatcaacctgatcacatcagaggaccgcttcaacctgaaa
gccatcgaggaccagctggtgaccgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggcagagttccacacgtccggcaccgactgcgacgtggaggagatcgaggag
aaaccaggacgccaacaggacagcacctaa
DBGET
integrated database retrieval system
