Pungitius pungitius (ninespine stickleback): 119218920
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Entry
119218920 CDS
T07626
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
119218920
NCBI-ProteinID:
XP_037329609
LinkDB
All DBs
Position
17:16765424..16798302
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AA seq
1633 aa
AA seq
DB search
MVVTRYMKQNRTKAEMESGLGFRIALVILALTLCGCERAEAQRAGCKNVHYDLAFILDTS
SSVGKDNFEKIRQWVANIVDSFDVAPEKTRVAVVRYSDRPTTEFTLGRHATLEDVKQAAR
NIRYLGGNTMTGEAINYTTASIFTERNGARPAARGVQRVAILLTDGRSQDYVLESSKAAA
RAGVRMFAVGIGEALRVELEEIAAEPKSAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNM
KVQPDRFKPGSSSHGLEEVPGFNLMEYFNVRDVLGTKEDEGQSSYVRLGTMPIVQQTEDV
FPQGLPDEYAFVTTFKFRKTSRREDWYLWQVYDKYGIPQVSIRLDGENKAVEYNAVGLTK
DAVRAVFKNPEVDNLFDRNWHKIALSVEAKSVSLYLDCKHIQTLPIEDREDIDIQGKTVI
GKRLYDSVPIDFDLQRMMIYCDSKQAELETCCDLPNGPCPKKVVTEAPPVEIPDPTPTSV
EQKRGPEVNCSCVAGDKGAIGEPGVAGPKGGKGDAGSKGAIGAPGIRGEKGDTGNVISVK
GDRGEKGDTGRIGLTGGPGQKGEKGTGGLPGIDGLSGDKGDKGEGGRDGGPGLPGLAGQK
GIQGDEGVAGTPGAKGVPGESGGKGEKGISGDKGGAGFDGLPGKPGAPGKDGLRGLVGAS
GPSGVKGIKGERGLPGLPGDVFQKEGLRGEKGDAGPPGPPGAEGPPGPEGQQGPPGKPGE
FGQRGKKGEGGLPGVDGLPGSAGPQGPPGPAGSTGHTGPPGLPGEIGRSGKEGEPGKPGH
PGKDGLDGLPGNDGTMGPRGERGADGFAGKPGPKGDDGPPGPRGPPGDRGEPGTPGQTGG
NGVRGDRGVPGERGQDGPLGPKGEKGDKGDEGARGLPGIPGDVANVIPEPGEPGKPGEKG
AKGDQGNPGEIGQRGLPGEQGFKGPVGPVGPKGDAGLTGETGRVGDAGPPGLAGPQGARG
LPGTAGIPGTIGPPGPAGQRGDKGETGKPGQSGPAGPPGDGGLTGPPGPPGKGKDGQNGD
PGPQGIQGPPGIKGQTGSRGEVGPPGDRGPAGEGRAGPPGPPGSHGDAGTPGLRGLPGVS
GPQGPPGHNGLPGRPGDKGSPGDPGKAADLSELDLKDVCSDCPAGPPGLPGLPGVPGDKG
HQGTPGKDGQDGYQGPPGTAGAQGAPGADGGKGVKGDRGPPGGPGDKGEKGHPGPPGHPG
PPGLMGTPGNDGLPGPVGPPGPPGEKGKEGLKGIQGPSGLPGLMGEPGKMGKEGQPGEPG
EPGKQGEPGPLGNPGLRGLPGFKGHRGEPGAPGAKGEDGKPGSSGRDGKPGKEGSMGPPG
REGLGGPRGEPGKPGEPGPSGKAGLAGTPGLSGNKGEPGNPGLPGFSGPKGPAGPPGPIG
PEGKQGTPGRVGDRGLKGDKGDSGVKGDKGQSGDPGMPGNPGPPGRKGHTGMMGMSGPPG
ELGAPGPQGPSGNPGIPGHRGESVSLEQMRRLIQEELAKQLDAKMAYLMAQMQPAHVRST
AGRPGPPGPSGKDGNVGRPGPPGEPGVPGQNGGEGSRGPMGPKGDRGARGERGEPGVGER
GEQGPSGPIGPAGLPGYGKDGSPGQAGAQGEPGNPGPHGQPGPTGPTGQCDPTQCAYYAS
LAQRPHTKNVKGT
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atggtggtaacaagatacatgaaacagaaccgaacgaaggcggagatggagtcaggactg
ggatttaggatcgccttggtcatcttggctctgactctgtgcggctgcgagagggcggag
gctcagagggcaggatgtaaaaatgtccactacgacctggcgttcatcttggacacctcc
tccagtgtcgggaaagataattttgagaaaatcaggcaatgggtggccaacattgtggac
tccttcgacgtggccccggagaagacgcgggtggccgtggtccgctacagcgacagaccc
accaccgagttcacgctgggcaggcacgccaccctggaggacgtgaagcaggccgcccgc
aacatacgctacctggggggcaacacgatgaccggcgaggccatcaactacaccaccgcc
agcatcttcaccgagcggaacggggccaggcccgcggcccgcggcgtccagagggtggcc
atcctcctcacggacggccggagccaggactacgtgctggagtcctccaaggcggccgcc
agggccggcgtcaggatgttcgccgtgggcatcggggaggccctgcgggtggagctggag
gagatcgcggccgagccgaagagcgcccacgtcttccacgtgacggacttcaacgccatc
gacaagatcaggggccggctgaggaggaggctgtgcgagaatgtcctgtgtcccaacatg
aaggttcaacctgatcggtttaagcccggcagcagcagtcatggccttgaagaggtccca
gggttcaacctgatggagtacttcaacgtgagagacgttctgggcactaaggaggacgaa
ggccaaagttcttacgttcgcctcggcaccatgcccattgtgcagcaaacagaggatgtg
tttcctcaagggttgccagatgaatatgcctttgtgacgacatttaaattcaggaaaacc
tcaagacgtgaagattggtacctctggcaggtttatgacaaatatggaatcccacaggtg
tccatccgcctggacggggagaacaaggcggtggagtacaacgctgtcggcctgaccaaa
gacgccgtcagggccgtgttcaagaaccccgaagttgacaacctgtttgaccgcaactgg
cacaagatcgccctgagcgtggaggccaagtccgtgtctctgtacctggactgcaaacac
atccagactctgcccatcgaagaccgggaggacatcgacatccagggcaagaccgtgatc
gggaagaggctgtatgacagcgtgccgatcgattttgacctccagaggatgatgatttac
tgtgactccaagcaggcagagctggagacctgctgcgatttacccaatggaccttgcccc
aagaaagtagtgacagaggcaccccccgtggaaatcccagatcccacacctaccagtgtg
gagcagaagagaggccccgaagtcaactgctcgtgcgttgctggagacaagggagccatc
ggtgagcccggtgttgcaggtcctaagggtggaaagggtgacgccggctctaagggcgcc
atcggagctccaggaatcagaggagaaaagggagacactggcaatgtaatatctgtcaaa
ggtgacagaggtgagaagggcgatacgggcagaatagggttgacaggtggccccggacaa
aaaggagagaaggggacgggtggcctgccaggtatcgacggcttatccggagacaaagga
gacaaaggtgaaggaggacgggatggtggtccaggtctaccaggtctagctggacaaaag
ggaattcaaggggacgaaggggttgccggcacgccaggagccaaaggtgtccctggcgaa
tcaggtggaaaaggcgaaaagggaatttcgggagacaagggtggggcaggtttcgacgga
ttacctggcaaaccaggtgctcctgggaaggatggtttgagaggactggtcggtgcatcg
ggacccagtggagttaaaggcatcaagggggagagaggccttcccggattacctggggat
gtgtttcaaaaagaaggcttacggggtgaaaagggggatgcaggacctcctgggcctcca
ggggccgagggccccccggggcctgaaggtcaacagggacctcctgggaaacctggagag
tttggccagaggggaaagaaaggagagggtggattgccgggagtggacggccttcccgga
tccgctggtcctcagggtccacctgggcccgcaggaagcacaggacacactggacctcct
ggtctgcctggtgaaattgggcgttcgggcaaagagggcgagcccggaaagcctggtcat
cctggtaaagacggtctcgacggtcttcctggcaacgacggcactatggggccccgggga
gagcgcggagcagatggctttgccggcaagcccggaccaaagggtgacgatgggcctcct
ggtcccagaggacctccaggggacagaggagagcctggtacccctggtcagacaggtggg
aatggagttagaggggacaggggcgttccgggagaaagaggacaggacggaccactggga
ccaaaaggggaaaagggggacaagggggacgagggagcgaggggacttcctggcatccca
ggggatgtggcaaacgtgatccccgagcctggtgaacctggaaaacctggagagaaggga
gcaaagggagatcaagggaacccaggagagattggtcaaagaggtttacctggtgaacaa
ggcttcaagggaccagttggaccagtgggtccaaaaggcgacgccggactaacgggagag
acgggacgcgtcggagatgccggtccacctggcctcgccggccctcaaggtgctcgcgga
ttacccgggactgcgggcataccagggaccatcgggcctcccggtccagccggacagagg
ggagacaagggcgaaacaggtaagccgggacaatcgggtcccgcgggcccacctggagat
ggcggtttgactggacccccgggaccaccgggaaagggcaaagacgggcagaatggggat
ccaggaccgcaaggaattcaaggacctccagggatcaagggccaaaccggctcccgagga
gaagtggggcccccgggggacaggggtcctgcgggggaaggccgagcgggaccaccgggg
cctccaggaagccacggcgacgctggaactccgggcctcaggggtctcccaggagtctcc
ggtcctcagggcccaccgggacataatggtttaccaggaaggccaggagacaagggatca
ccaggagatcctggaaaggcagcagacctgtctgaactggatctgaaggacgtctgctca
gactgccccgcgggcccacctggactgccaggtctcccaggggtcccaggggacaaagga
caccagggaactccggggaaagacggtcaagatggctaccaaggcccgccggggacagcc
ggagctcaaggggcccctggagccgacggaggaaagggtgttaaaggggatcgaggaccc
ccaggaggccccggagacaaaggagaaaagggtcacccaggaccgcctggtcatccgggc
ccccccggcctaatgggcacacctggtaacgatgggctgcctggccccgtcggccccccg
ggaccccccggagaaaagggcaaagagggcctcaaaggaatccaggggccatcaggtctt
cccggcttgatgggtgagcctgggaagatgggaaaagagggccaaccaggtgaaccagga
gagcctgggaagcaaggtgagcctggaccactaggaaacccggggctcaggggactcccg
ggcttcaagggccacagaggagagcccggggctcctggagcgaagggtgaagatggaaag
cccggatcatcgggccgcgacggcaaaccggggaaggagggctcgatgggacctccgggc
agagaaggcctcggtggaccaagaggagagccgggcaagccaggtgaaccggggccttcg
ggaaaagcaggtctcgctggaacaccaggcctcagcggaaacaagggagagccgggcaac
cccggcttaccgggcttcagcgggcccaagggccccgcgggtccacctggtccgattggc
ccggaagggaaacaggggacgccgggcagagttggcgatcgcggcctcaaaggagataag
ggagactcgggcgtgaagggagataaaggacaatcgggagacccggggatgcctgggaac
cccgggccccccggcagaaagggccacacggggatgatgggcatgtctggacctcccgga
gaattgggggctccggggccccaaggaccttcggggaatcccggtattccaggccacaga
ggcgagtcggtgtcactggaacagatgagacggctcatccaggaggagctggccaaacag
ctggatgccaagatggcttacctcatggctcagatgcagccggcccacgtgaggagcacg
gccggccgcccaggacctccgggcccttcagggaaggacggcaatgtcggacgacctggc
ccccccggggagcccggcgtgcctggacagaacggcggggaaggatccaggggacccatg
ggccctaaaggcgacagaggagcgaggggagaacggggggaaccgggtgtcggtgaaaga
ggagagcaaggcccctcgggcccgataggtccagccgggctgcccggatacggcaaagac
gggagccccgggcaagccggagcccagggagagccggggaaccccggcccccacggtcaa
cccggacccacgggtcccaccggccagtgtgaccccacccagtgtgcctactacgccagc
ctggcccagaggccccacaccaaaaacgtcaaggggacctaa
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