Pungitius pungitius (ninespine stickleback): 119218924
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Entry
119218924 CDS
T07626
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03030
DNA replication
ppug03420
Nucleotide excision repair
ppug03430
Mismatch repair
ppug03440
Homologous recombination
ppug03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119218924 (rpa1)
03420 Nucleotide excision repair
119218924 (rpa1)
03430 Mismatch repair
119218924 (rpa1)
03440 Homologous recombination
119218924 (rpa1)
03460 Fanconi anemia pathway
119218924 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119218924 (rpa1)
03032 DNA replication proteins [BR:
ppug03032
]
119218924 (rpa1)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119218924 (rpa1)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119218924 (rpa1)
DNA replication proteins [BR:
ppug03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
119218924 (rpa1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
119218924 (rpa1)
MMR (mismatch excision repair)
119218924 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
119218924 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
RADX
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
119218924
NCBI-ProteinID:
XP_037329613
LinkDB
All DBs
Position
3:complement(12035347..12057939)
Genome browser
AA seq
599 aa
AA seq
DB search
MAKLSEGAIQALSKGDSVADAVLQLVNIRKIDSGNGAIRFRVMMSDGLHSMSSFMLSTQL
NFMAEENVLAPNCICILKKHVTNILKDKRRVVVILEIEVIKPAQMVSGRIGDPIPLTEGT
KVQQSAPIPENRQPLQQQQNKNEGLKGFTRDFGKKTPSAMPSTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKTSIRTWSNSRGDGKLFSMEILDESGEIRVTGFNQEVDKFFSLVDVGKV
YYISKGSLKIANKQYTSVKNDYEMSLNGESTIIPCDDAVDVPVIQCDFVSIGDLENREKD
SIIDVIGVCKSVDEVTRLTTKSNKEVSKRTVNLIDMSGKLVTVTLWGDEAEKFDGSGQPI
LAIKAAKLSDFGGRSISASFSSTLMINPDIPEAYKLRSWYDKEGHAMDGQSLTEVRGSGG
GITNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQHNGM
FRCEKCDKEFPNFKYRLILSANVADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNETA
FDEIFQQANFNTFVFRSRVKLETYNDESRIKATVMEVKPVDHKEYSLRLISNIRKLAAQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagctttcagagggtgcgatacaggctctatcaaagggcgactctgttgccgac
gcagtgcttcagttggtgaatattcgcaagattgatagtggaaacggtgcgatccggttt
cgggtgatgatgagtgatgggctgcacagcatgtcctccttcatgctctcaacgcagctg
aacttcatggctgaggagaacgtattggcccctaactgcatctgtattctgaagaagcat
gtgactaatatactgaaggataaacgacgggtggtggtcattttggaaattgaagtcatc
aagcctgctcaaatggtttctggaagaataggtgatcctattcccctcaccgagggtaca
aaagtccagcagtctgcaccaatccctgaaaaccgccaaccactacagcagcagcagaat
aaaaatgaagggctcaaagggttcactagagactttgggaagaagaccccgtctgctatg
cccagtactccagggggcagctctaaagttgtgcccattgccagcctcaacccctatcag
tccaagtggaccatccgagcccgcgtgaccaacaagaccagcatccgcacgtggagcaac
tctcgtggagatggaaaactcttctccatggagattctggatgagagtggggagatcaga
gtgaccggttttaaccaagaagtggacaagttctttagcctcgtggatgttggaaaggtc
tactacatctccaagggctccctgaagatcgccaacaagcagtacacatcagtgaagaac
gactacgagatgtctctcaacggggagtccaccatcatcccctgtgacgacgccgtcgac
gtccctgtgatacagtgcgacttcgtctctattggggacctggagaaccgagaaaaggat
tccatcattgatgtgataggggtgtgcaagagtgtggatgaagtgacccgcctcaccacc
aagtcaaacaaggaggtgtccaagaggacggtcaacttgatagacatgtccgggaagctg
gtgactgtcacgctgtggggagacgaagcagaaaagtttgacggctcgggacagcccatt
ttagccataaaggcggcgaagctctctgactttgggggccgctccatctccgcatccttc
agcagcaccctgatgatcaacccagacatcccagaggcatataagctcagaagctggtat
gacaaggagggccacgccatggacggacagtctctgaccgaggtgagaggcagcggggga
ggaatcaccaactggaagaccctgtctgacgttaagacggagcacctgggacacggagac
aaggcggactactacacctgcatagctaccatagtatacctgcgcaaggagaactgcctc
taccaggcctgtcccagccaagactgcaacaagaaggtggtcgaccagcacaacggcatg
ttccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccgcctcatcctttct
gctaacgttgcagattacgcagacaaccagtgggtgacttgcttccaggagagtgcagag
gccattctcggccagaatgcagcttacctggggcagctcaaggactcgaacgaaactgcc
tttgacgagatcttccaacaagccaacttcaacacatttgtcttccgcagcagagtgaag
ctagaaacgtataacgatgaatccaggatcaaagctaccgtgatggaagtgaagcctgtt
gaccataaggagtacagcctgaggttgatctccaacataaggaagctggctgcacagtag
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