Pungitius pungitius (ninespine stickleback): 119218937
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Entry
119218937 CDS
T07626
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119218937 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119218937 (cnot3b)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119218937 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119218937 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
119218937
NCBI-ProteinID:
XP_037329634
LinkDB
All DBs
Position
17:complement(17469079..17481476)
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AA seq
964 aa
AA seq
DB search
MKKMARGSLAKGEIDRCLKKVAEGVEQFEDIWQKVRKDRRTDGTAVCIQNLHNAANANQK
EKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTK
AYSKEGLGLAQKVDPAQKEKEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKE
NQDRIEELKKFIEKHRHHIRMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEE
NEFLYDDLDLDDIPQTLVATSPPGNSQLEDEIFQNSSSTPNSTTSSSPIPPSPATCTTEN
SEDDKKRGRSTDSEVGQSPVKNGNPSSSLSSSSSSSSSSSSSSSSSSSVSGLNSSSLVSV
ANIAGGGLGGSGGGGGGHLGGLGGLLSNTSAGSYSNATQQPPHPSAVKNLVGASTSAPIS
IPSASANSHMVSSSSPPNAITQGLFTSMSQPQGSTPSSNSLGLSLGLSLGKGGMSGSMSG
GPMSGSLGLSGMSASLSNMASLLSGSTPAPYSQAAAASGAIGSGLPGSLGGIGINPTTTN
SSAGSIGSGSITVGGPTSSSSSSSSSSGGLLGPAPGLGGVGSGMLGLSSGQSGMQGSSLM
SLSPVGGLAPGGGVGVIGSSGGGSVTGGSGVLGGGLALSVRPPAGQQKQNGSTSYSAVVA
DSTADSAFTSASQSQSSQSMSLTSTANQPKDTCSSLLGSICLTSSSPSPAFYSEAKTVGG
GLLNGPLSYSQPSDGIKPQEPLSSLKSMAERAALSSGMEGDVSSLHLTPVSVSRLSSDIF
PSSTVAPSGPPSSAPQLSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPS
DSERIRQYLMRNPCPTLPFHNQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAK
ALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLED
RDLQ
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatggcgagaggtagccttgcaaaaggtgaaatagatcgatgtctgaaaaaa
gtagcggaaggagtcgaacagtttgaagacatttggcaaaaggtgaggaaggatcgtcgg
acggacggaaccgcggtttgcatccaaaatctccacaatgcagccaacgccaaccagaag
gagaaatatgaagcagacctcaagaaagagattaaaaagctgcagcgtcttcgagaccag
atcaagacgtgggtcgcatccaacgagatcaaagacaaaaggcagctggtggagaaccgc
aaactcatagaaacgcaaatggagcgcttcaaaatagtggagagagaaactaagacaaag
gcgtactctaaagagggcttgggtctggcccagaaggtggacccggcccagaaggagaag
gaggaggtcggcaactggctgacgaacaccatcgacaccctaaacatgcaggtggaccag
tttgagagcgaagtggagtctctgtcggtccagaccagaaaaaaaaagggagacaaagag
aaccaggaccgcatcgaggagctgaagaagttcatcgagaagcatcggcaccacatccgg
atgctggagacgatcctgaggatgctggacaacgactcgatacaggtggactccatcagg
aagatcaaggacgacgtggagtattacctggactcctcgcaggatccggactttgaggag
aacgagttcctctacgacgacctggacctggacgacatccctcagacgctggtcgccacc
tccccgcccggaaactctcaattggaggacgagatctttcagaactccagcagcacgccg
aactccaccacctcgtcctcgcccatccccccgtcgccagccacctgcactacggagaac
tcggaggacgacaagaagaggggccgctccacggacagcgaggtcgggcagtcacctgtg
aagaacgggaacccctcctcctccttgtcctcctcctcctcctcatcgtcctcctcctcc
tcctcctcttcctcttcatcctccgtctcaggactgaactcgtcctcgctcgtctccgtg
gccaacattgccggaggggggctcggcggctccgggggcggcggcggcggccacctgggc
ggcctggggggcctcctctccaacacgtccgcaggcagctacagcaacgccacccagcag
cccccccacccgtcggcggtcaaaaacttagtcggtgcctccacctcggcccccatctcc
atccccagcgcctccgccaacagccacatggtctcctcctcctccccccccaacgccatc
acccaggggctcttcacctccatgtcgcagcctcagggctccaccccctcctccaacagc
ctgggcctcagcctgggcctctcgctggggaaaggcggcatgtccggctccatgtccggg
ggccccatgtccggcagcctcggcctgtcggggatgtcggcgtccctgagcaacatggcg
agcctcctgtccggctccaccccggcgccctactcgcaggccgccgccgcctcgggggcc
atcggctccggcctgccgggctccctgggtggcatcggcatcaaccccaccaccaccaac
agctcggcgggctccatcggcagcgggagcatcacggtcggcggacccacctcctcctcc
tcctcgtcctcctcgtcctccggcggcctgctgggcccggcgccggggctgggcggcgtg
ggctccgggatgctggggctgagctccggtcagtctgggatgcaggggtcctcgctgatg
tccctgagccccgtcggaggcctggcgcccggcggcggcgtgggagtcatcgggagcagc
gggggcggctcggtgaccgggggcagcggcgttcttggcggcggcctggcgctctccgtc
aggccgcctgccggccagcagaagcagaacggcagcacgagttacagcgccgtggtggca
gacagcacggcggactccgccttcaccagcgccagccaatcacaaagcagccaatccatg
tccttgacctccacagccaatcagcctaaggacacttgttccagtttactgggatccatt
tgtttgacgtccagctcgccgtcgccggcgttctacagcgaggccaagacggtgggcggc
ggcctgctgaacggcccgctgtcgtactcgcagccctccgacggcatcaagccccaggag
cctctgagcagcctgaagtccatggccgagcgcgcagcactcagctcagggatggaggga
gacgtgtcctccctgcacctcaccccagtctccgtctcccgcctctcctcggacatcttc
cccagcagcaccgtggccccctcgggccccccctcctcggcgcctcagctctcgctgtcg
gaggtcagcatccccccgtcactgggggtctgcccgctggggccggtccccctgtccaaa
gaccagctctaccaacaggccatggaggaggcggcgtggacgcacatgccccacccgtcc
gactcggagaggatcaggcagtacctgatgaggaacccctgccccaccctgcctttccac
aaccaggtgccaccgcctcactcggacaccgtggagttctaccagaggctttccacagaa
accctcttcttcatcttctactacctggagggcacgaaggcccagtatctggcagccaaa
gccctgaagaagcagtcgtggaggttccacacaaagtacatgatgtggttccagaggcac
gaagaacccaagaccatcacggacgagtttgagcagggaacctacatctactttgactac
gagaaatggggccagcgcaagaaggagggcttcacctttgagtaccgctacctggaggac
cgagacctgcagtga
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