Pungitius pungitius (ninespine stickleback): 119219132
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Entry
119219132 CDS
T07626
Symbol
vps50
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin
KO
K23288
syndetin
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119219132 (vps50)
Membrane trafficking [BR:
ppug04131
]
Protein recycling
Others
EARP complex
119219132 (vps50)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
119219132
NCBI-ProteinID:
XP_062414375
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All DBs
Position
17:12166201..12263300
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AA seq
991 aa
AA seq
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MQKIKSLMSRQGLKSPQESMADLSPVESLRIPSKEELRELREQPIDPQVEQEIIESIEEV
YFSTDSFDMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKKVADLILEKQPAYVKELE
RVTALQANLQLAAVICTNARRQLSMSKEGFTEASLGLLSNQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKNFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITLDSYIPCLTDLCKALWEVMVSYHRTMQWHEEHDKHEATPTADG
AAAAESDDSVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQCRSPSVSPSRRSSTAPAQDELSLFQQYHQEGNPFEMRAENKEEETEDVL
ASNGYESDELEKNVYQDYDSDSDVPEELKQDYVDEQTGDVPLKSASRETIRSKKKSDYNL
NKTNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDM
PVPSPSLPTHGGRDAGPVRVVGPACLYESSGLGLISSRLRTTLNRIQESLIDMEAAAENA
PAHGAAEDRKEKVPSPHLSQLVVLTNGGTLYGLAQRVVATESLVFLAEQFESLQSHLDTM
MPAAKKPFLQQFYSQTVSTASELRKPIYWVVAAKAIDYEQMLLLMAGVKWDIREIMSQHN
VYVDVLLKEFEEFNKRLQDVSRHVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEG
RALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLA
NLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctcttatgtcccggcagggcctgaaaagcccccaggaaagcatg
gcagacctcagcccagtggagagcctgaggatccccagcaaggaggagttgcgggagctg
agggagcagcccatcgacccccaggtggagcaggagatcattgaaagcatcgaggaggtc
tacttctccaccgactccttcgacatggtgcagcacgagctggagaagctaccacctgag
ctaaatctgcaggagctggaggagtacagggacaagctgaagagacaacaggcggcagtt
tctaaaaaggttgccgatcttattctggagaaacagccagcttatgtcaaggaactggag
cgagtgaccgcgttacaagccaacctgcagctggcggcggtcatttgcactaacgcacgg
aggcagctgagcatgtcgaaggagggattcaccgaagccagcttgggtctcctgtccaat
cagaggaggcgacagctgctgacagggttgcttaaatcactgaggaccatcaagacactg
caaagaacagatgtgagactcagcgagatgcttgaggaggaagactatcccggcgccatc
cagctctgtctggaatgtcagaaggctgccagcaccttcaaacactacagctgcatcagt
gaattgaattccaaactacaagacactctggagcaaatagaggagcagctcgacgtcgcc
ctgtcgaagacttgcaagaactttgatgtttcgcactacaccaaggtccaactggcctac
accctcctgggcaagactcagaccgccatggaccagctccacatgcacttcacccaggcc
atccacaacaccgtgttccaagtggtgctgggatacgtggagctctgcgccggcaacgcc
gacaccaagtttcagaagatgcagtacaaggacctgtgcacgcatatcactctggacagc
tacattccctgcctgactgatctgtgcaaggcattgtgggaggtgatggttagctaccac
cgcaccatgcagtggcacgaggagcatgacaaacacgaggccacgcccactgcagatggt
gcagcggcagcggagtctgatgactcggtggtggaccgcagctacgtgaagaagaagctg
gagcacggactgacgcggatctggcaggacgtccagttgaaagtgaaggcctacatcctg
gggacggacatgtccaacttcaagtacgacgatttcatcgtggtgctcgatgtcatcagc
aggttgatgcaggtgggggaggaattttgcggtagcaagtccgaggtcctgcaggagtct
atcaaacgccagagtgtcaactactttaaaaactatcacagggcacggctggaagagctg
aggatgtttctggagaatgagacgtgggaactttgcccagtaaagtctaactttaacatc
gcccagctgcatgagtttaagttcatgggccagtgtcgttctccctccgtctccccgagc
agaaggtcctcgaccgccccggctcaggacgagctttccctgttccagcagtaccatcag
gagggaaacccctttgagatgcgtgctgagaacaaagaggaggagactgaggacgtgctg
gcatctaacgggtacgagtcagacgagctggagaagaatgtgtaccaggactacgacagt
gacagtgacgtccccgaggagctcaagcaggactacgttgacgagcagacgggggacgtc
ccgctcaagagtgcgtcccgagagaccataagaagcaagaaaaagtctgactacaacctt
aataagaccaatgcaccgattctcaccaataccaccctcaacgtcatccggcttgtcggg
aagtacatgcagatgatgaacattctgaagccgatcgccttcgacgtcatccactgtgtg
tcgcagctcttcgactactacttgtacgccgtgtacactttcttcggacgcaacgacatg
cccgtcccgagtccgtctctgccgactcatggtggcagagacgcggggcctgtcagggtg
gtgggcccagcttgcttgtatgagtcatcgggtctgggcctcatcagcagcagactgaga
accacactgaaccggatccaggagagcctcattgacatggaggcggcggcggagaacgca
cccgcccacggggcagcggaggaccgaaaggagaaggtgccgagcccccatctcagccag
ctggtggtcctcactaacggcgggactctgtatgggctcgcacagagagtggtggccacc
gagtctctggtgtttctggccgaacagtttgaatccctgcagtcccacctggacaccatg
atgcctgcagcaaagaagcccttcctgcagcagttttattcccaaacggtgtctacggcc
agtgagcttcggaaaccgatatactgggttgtcgcggcgaaggccatcgactacgaacaa
atgttgctccttatggctggcgttaagtgggacattagggaaataatgtcgcagcataat
gtgtatgtggacgtcctgttaaaggagtttgaggaattcaacaagcggttgcaggatgtt
tccaggcacgtgcgcatcccgctgcctgtgtccaacgtgctgtgggagcactgcatccgc
ctggccaacaggactctagtagaaggttacgctaacgtgaagaagtgcagcaatgagggc
cgggccctgatgcagctggacttccagcagttcctcatgaagctggagaagctgacggac
ctgcggcccattcccgacaaagagtttgtggagacctacatcaaggcctactacctcacc
gagaacgacatggagcagttcatcaagaaccacagggagtactccatgaagcagctcgcc
aacctggtgaacgtctgtctgggctcgcacataaacaagaaggcccgccagaaactcctg
gcggccattgacgacattgaccgacccaagaggtag
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