Pungitius pungitius (ninespine stickleback): 119219147
Help
Entry
119219147 CDS
T07626
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04136
Autophagy - other
ppug04140
Autophagy - animal
ppug04145
Phagocytosis
ppug04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
119219147 (atg16l1)
04140 Autophagy - animal
119219147 (atg16l1)
04136 Autophagy - other
119219147 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
119219147 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119219147 (atg16l1)
03029 Mitochondrial biogenesis [BR:
ppug03029
]
119219147 (atg16l1)
Membrane trafficking [BR:
ppug04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
119219147 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
119219147 (atg16l1)
Mitochondrial biogenesis [BR:
ppug03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
119219147 (atg16l1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
ATG16
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
DSE1_N
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_NOL10_N
Tricorn_2nd
WD40_RFWD3
eIF2A
CFAP251_N
Beta-prop_ACSF4
PUMA_CC
Beta-prop_IFT140_1st
Beta-prop_DCAF12
NET2A
DUF7310
ADIP
Beta-prop_SPT8
AP5B1_middle
Uso1_p115_C
CNN1_N
TolA_bind_tri
FKBP15
CCDC39
CCDC93_CC
CLIP1
Rod_CreS
CC_Bre1
Fez1
Motif
Other DBs
NCBI-GeneID:
119219147
NCBI-ProteinID:
XP_037329969
LinkDB
All DBs
Position
3:217666..225404
Genome browser
AA seq
620 aa
AA seq
DB search
MAERCAECSWKRHILDQLKARDRVQRQSFEEIVLQYNRLLEKSDLQTVLSERYQPDKYDV
QRGHDSSVGADPNRGEVLQQEMSQMRIKHQEELTELHKKRGELAQNVIELNNQIQQKDKE
IQSNEAKMSEYQQQISSLEGDCRELRGYLQDLERANQTLKDEYDALQITFSALEEKLRKT
SEDNQELVSRWMAEKAQEANKLNAENEKDSRRRQAKLQKELAEAAKEPLPIEPDDDIEVL
AEDGGKGGGETSPKRALSRTPSKKSSQPPPAGLLDSISNIFGESECVKPGLAPPLSRRRP
ANSFSSSPENTDAPSGVCAEVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRVK
LWEVVAGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGH
SGKVLAARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHF
DKKVRFWDIRAESIVQELELFGRVTSLDLNHDRTELLTCSRDDLVKIIDLRTNAVRQTLS
AQGFKCGADWTRVTFSPDGSYVAGGSADGALYIWNVLTGKVDRTLDRNHNSAINSVSWSP
SGAFVASVEKGSKAILWSDM
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggtgtgctgagtgttcatggaagagacacatcttggatcagctgaaagcc
agagacagagttcagaggcagagctttgaggagattgtcctccagtataaccgtctgctg
gagaagtctgacctgcagactgttttatcagaaagataccaaccggacaagtatgacgtc
cagagaggacacgactcaagcgtgggggcagaccctaaccgcggtgaggtcctgcagcag
gagatgtctcagatgagaatcaaacaccaggaggagctgacagagctgcacaagaagcga
ggagagctggctcagaatgtgatcgaactgaacaaccagattcaacagaaagacaaagag
atccagagcaacgaggccaagatgtctgagtaccagcagcagatcagcagcctggaggga
gactgtcgtgagctgaggggctacttacaggacctggagcgggccaaccagaccctgaaa
gacgagtacgacgccctgcagatcaccttctctgctctggaggagaagctgaggaagaca
agcgaagacaaccaggagctggtgtcccgctggatggctgagaaggctcaggaggccaac
aagctgaacgcagagaacgagaaggacagcaggcgtagacaggctaagctgcagaaggaa
ctggccgaggcagcaaaggagccacttcccatcgagccggacgacgacatagaggttctg
gcagaggatggcgggaaggggggaggagagacgtctcccaagagagcgcttagcaggact
ccaagtaagaagagttcccagcctccacctgctggtctgctggactccatctccaacatc
tttggcgagtctgagtgtgtcaagcctggactcgcccccccgctctccaggcgtcgacct
gctaactccttcagctcttcgcctgagaacaccgacgccccctctggagtgtgtgcggag
gtccgagtcccttcaaccgctctccacgtgttcgaggcacacgacggcgaggtcaacgca
gtgaggttcagccctggatctcgtctcctggcaaccggagggatggaccgcagggtgaag
ctgtgggaagtggttgcaggtcgctgtgaacctaaaggcgctctgaccggcagcaacgct
ggaatcaccagcatcgagttcgacagcgctggctcctacctgctggcggcctccaatgac
tttgcgagtcggatctggactgtagacgactacagactccgacacaccttgacgggccac
agtgggaaggtgctggcagctcgcttcctattggacaacgctcgcatcgtctccgggagc
tacgaccgcacgctgaagctctgggacctccgcagcaaagtctgtatgaagacggtgttt
gctggttccagctgtaacgacattgtgtgcacggagcagtgcgtcatgagcggacacttt
gataagaaggttcgattctgggacatcagagcagagagcatcgtccaggagctggagctg
tttggaagagtcacgtctctggacctgaaccacgaccgcacggagctgctcacctgctcc
agagacgacctggtgaagatcatcgacctgcgcaccaacgctgtgaggcagacgctcagt
gctcaagggttcaagtgtggagctgattggacgagagtcaccttcagtcccgacggcagc
tacgtggctggaggatcagctgatggagctttgtacatctggaatgtcctcacagggaaa
gtggaccgaactctagaccggaaccacaactctgccatcaactcagtgtcctggtcgccc
tccggagcattcgtggctagtgtggagaaaggcagcaaggccatcctgtggtctgacatg
tga
DBGET
integrated database retrieval system
