KEGG   Pungitius pungitius (ninespine stickleback): 119219212
Entry
119219212         CDS       T07626                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119219212 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppug03041]
    119219212 (snrnp40)
Spliceosome [BR:ppug03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    119219212 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    119219212 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54
Other DBs
NCBI-GeneID: 119219212
NCBI-ProteinID: XP_037330140
LinkDB
Position
17:11170473..11177631
AA seq 347 aa
MIEPKKRAADMAVVPTAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCDNYATMKGHSGAVMELHYNTDGSMLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAATFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGGSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaacccaagaagagagcggcggacatggctgtggttcctaccgccgtgaagcgg
ccccgcaccgagctggtggccgcggctcagtcgcaacaactcgtggcgatgggcccccca
cggagctccagcctgcaggctcccatcatgctgatgtcgggccacgagggggaggtctac
tgctgcaagtttcaccccaacggagccacgctggcctcctcaggatttgacaggctcata
ttgatgtggaatgtatacggggattgtgacaactatgccactatgaagggccacagtgga
gcagtgatggagctgcactacaacacagatggcagcatgctgttttccgcgagcacggac
aagactgtaggcgtctgggacagtgaaaccggcgagaggatcaagcgtctgaagggccac
acctcctttgtgaatacctgctaccctgctcgccgagggccccagctcgtctgcactggc
agcgatgacgggacggtcaaactgtgggatattcgcaagaaaggcgcgatccacactttc
cagaacacctaccaggtgctcgccgccacattcaatgacaccagtgatcagatcctctct
ggaggcatcgacaacgacatcaaggtgtgggacttgaggcagaacaagctgatctacaac
atgcacggccatggtgactcagtaactggactcagtctgagctctgaggggtcgtacctt
ctctcaaactccatggacaacacggtgcgtatttgggatgtccggccattcgcacccaag
gagaggtgcgtgaagattttccagggcaacgttcacaactttgagaagaacctgctgagg
tgctcctggtctactgacggcagtaagatagctgccggctccgctgacagatttgtgtac
atctgggacaccacatcacgtagaatcctctacaagctgccgggccacgccggctcggtt
aatgaggtggcctttcacccagaggagcctatagtgctgtctggcggcagtgacaaaagg
ctctacatgggagaaattcagtag

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