Pungitius pungitius (ninespine stickleback): 119219301
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Entry
119219301 CDS
T07626
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119219301 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119219301 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119219301 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ppug00535
]
119219301 (col9a2)
Proteoglycans [BR:
ppug00535
]
Extracellular matrix (ECM) proteoglycans
Others
119219301 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119219301
NCBI-ProteinID:
XP_037330314
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Position
17:complement(13828886..13843302)
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AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQAGPPGPSGTPGSDGIDGEKGPPGPPGP
PGLKGEPGEPGPDGVAGENGIDGLIGAKGDRGPTGSPGPKGKPGPGGEPGPPGPGLPGLS
GAPGPIGLPGEIGLSGPKGGAGSPGPPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKTGPKGEVGVSGEQGIPGPSGPMGLRGYPGMM
GPKAEAGPRGYKGIRGPVGIPGPPGEEGPKGPPGEAGDMGDKGGRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGGPGQAGMPGPPGPQGAAGLPGSPGPKGGSGAKGEPGPRGHV
GMTGAPGHLGEPGLPGVAGMEGVPGPKGDRGQRGAVGPQGIVGKPGNKGERGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGDDGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDPGHNGPT
GDPGKPGDLGPPGLPGPRGLNGERGVPGMPGIQGPSGRDTSDQHIVEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGSAGPQGPHGLPGARGVPGMIGGSGQIGNTGLKGKR
GAKGDRGDPGKPHPGPPGPPGIQGPAGLDGVARNGRHGERGPQGSAGEAGYPGSAGSTGL
PGFCEAAMCLAASAYTSPRLQEAGSIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggtgatactgcagaccctgtgcctggcg
ctggcccaagtgaggggtccacctggacctcaaggccaagccggcccgccaggcccctcc
ggcacacctgggtcagacggcatcgatggagaaaaaggaccacctgggcccccgggtcca
ccaggactgaagggagagccaggagagccaggtcctgatggagtagcaggagagaatggc
attgatggtttgattggagcgaaaggcgatcgaggtcccaccgggagcccggggcctaag
ggtaaacctggaccaggtggagagcctggacctcctggacccggccttccaggactatct
ggcgctccaggcccgattggtcttcccggggaaattggactatctggtccaaagggtggc
gcgggatcacctggacctccaggacttcctgggcctcccggcaagccaggtcctccgggg
aagttcattggtggagaagagggaagcgcagacttccagtgtcctcttaactgtccagcg
ggacctaaagggccccagggactgcagggagttaagggacacaaaggacgggccggtgtc
ctcggagagcccggcagcatcggcaaaacgggtcccaagggagaagtgggcgtctccggg
gagcagggcatcccgggaccttcgggtccaatgggcctgagaggttatccaggaatgatg
ggtcctaaagcagaagcagggccccgtggttacaagggcatcaggggacccgtgggaata
cctgggcctcctggtgaggagggacctaaaggaccacccggagaggcaggagacatggga
gacaaagggggccgaggcatccagggcccacagggtgcggttggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagatggtacgcctggtattccagggatcaagggtggc
cctggccaggccgggatgcctggtcctcctggtcctcagggagcagcgggattgcctggc
agcccgggaccaaaaggtggatctggagcaaagggagagcctggacctcggggtcacgtt
ggcatgacgggtgcccccggacatctgggcgagcctggtcttcctggcgtggccggcatg
gagggagttcctgggcctaagggggacagaggccagagaggagcagttgggccacagggg
atcgtcggcaagcctggaaacaaaggagagagaggacctatcggtgttccaggtgcacag
ggtcttagcggcaccaagggagacaagggcttccaaggaaaagtggggtcaaaaggagac
gatggtgaccccggcgttgagggattggctggcgagaaaggtgaaaagggtttgtctggt
gaacccgggcccaaaggacagcaaggcattaggggggaccccggacacaatggaccgacc
ggagacccgggtaaacccggcgacctgggacccccgggactgcccgggcccagggggctc
aatggagagcgaggagtacccggcatgccgggcattcaggggccgtcgggacgtgataca
tctgaccagcatattgtcgaagtggtcttgaagatgctgcaggagaggctagctgctgtg
gcagtgagcgccaagagggctgtgcttggtggagcgggtgtaatggggcctcccggcccc
cctgggcccccggggtcagctggcccgcaggggccgcatggcctacccggtgcccgcggc
gttcctggcatgattggaggatctggacagattgggaacacaggacttaaaggaaagaga
ggggcaaagggagacaggggagatcctggtaaaccccacccgggtccaccaggaccccca
ggcatacaaggtcctgctggtttggatggtgtggctcgcaacggtaggcacggcgagcgg
ggaccccagggatcagccggagaagccggttaccccggttcggcgggttcgacaggcctc
cccggcttctgcgaggcggcgatgtgtttagctgcgtcggcatacacatccccgagatta
caggaggcgggaagtatcaaaggacctaatgtttag
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