Pungitius pungitius (ninespine stickleback): 119219725
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Entry
119219725 CDS
T07626
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119219725 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119219725 (smarcc1b)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119219725 (smarcc1b)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119219725 (smarcc1b)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119219725 (smarcc1b)
PBAF complex
119219725 (smarcc1b)
GBAF(ncBAF) complex
119219725 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Totivirus_coat
DUF919
Motif
Other DBs
NCBI-GeneID:
119219725
NCBI-ProteinID:
XP_062414404
LinkDB
All DBs
Position
17:complement(11835136..11842499)
Genome browser
AA seq
951 aa
AA seq
DB search
MATMSGGTNLGMHGTSQASSGTSAHRKKYSSPSARFWESPDTLAQLEVVRQWIGKHYKKY
VLVDAPSCQALAGMTLQLLQFQEDAFGRQATGPALTKLPTQCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLHNPSRTERNVEMFGAIERVLIQNNCMSLPVVYVDPTLGQELAGRLKD
IITKHKGTLTEDRTLASHHLYSSPAFADEGGWMRPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVERQVEEPPHSEKPWRVHASWVLDTEVFNEWMNEEDYCVDERNVPIIYRQRIHLRDHQ
DAKVTPSKKRRRSPSPHSAEGRKKGKKGRRRGHHEEEPEEDLTKDMEDPTPVPNMEEVVL
PKNVNLKKDSENTPVKGGTMADLDELEEDFTGRDDEEMARLSEGDDNIPEQTHHIIIPSY
TSWFNNNSIHAIEKRALPEFFNGMNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTSCRRN
LTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPL
QVSASQHMLFFPEKSKEKPLDCQNFGLRSDIYTKKHPKTKGTSAGREWTEQETLLLLEAL
EIYRDDWNKVSEQVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAFQPVPFIQSENPV
MSTVAFLASVVDPRVASSAAKAALEEFSRVQQESVDKVSETSNQPNKIESMDTEIIETNS
SSHQVPMRADGLTVEPSLVNVEGVLVKRENAENILSDERDVRTDDDESLERGEVDEARVM
EQDLVEGRVVTAAAAALASAATKAKHLAAVEERKVKSLVALLVETQMKKLEIKLRHFEEL
ETIMDREKEALEQQRQQLLTERQTFHTEQLKQAEMKVRQQREQQGQPGFTMQHSALPPPS
GQPTPNRVMPGGGNAQAMAPRHPGAPNGMYPSSQPDGTAPAQPGPPASTHS
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggtggaacaaacctcggcatgcacgggacaagccaagccagctcc
ggaacatccgcacaccgtaaaaaatacagcagtccgtccgccaggttctgggagagtccg
gatactttagcccaactggaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggttgatgctccgtcgtgtcaggctctggctggaatgactctgcagcttctccag
ttccaagaggatgcctttggcagacaagctaccggtcctgctctcaccaaactgcctaca
caatgcttcctggacctgcggccagggggtggactgtgccatattcttggcactgcctat
aagtttaaggctgagcaaggctggcgtaggtttgacttgcacaatccgtcaagaactgaa
cgaaatgttgagatgtttggtgctattgaaagagtcctgattcagaacaactgtatgtcg
ctgcctgtggtatatgtggacccgacactgggtcaggagctggctggcagacttaaggat
attatcaccaaacacaaggggactctcactgaggaccgaacgctcgccagtcaccacctc
tactcctcaccagcttttgcagacgaaggtggttggatgcgtcctgtcatgcggaaagac
aaacatgtcttggtacactggggcatgcaccctgacagttatgacagttggttgtcctca
agtgatgtggaaagacaggttgaagagccaccacattcagaaaagccgtggcgggtccat
gctagctgggttctggacacagaagtttttaacgagtggatgaacgaagaagactattgt
gtggacgagaggaatgtgccaatcatttaccgccagcgcatacacctcagagaccaccag
gacgccaaagtcaccccctccaaaaagagaagacgctccccttctcctcattccgctgaa
ggcagaaagaaaggaaagaaggggaggaggcgcggacatcatgaggaagagccagaagag
gacttgaccaaagacatggaggaccccacccctgttcctaacatggaggaggttgttcta
cccaagaatgtcaacctgaagaaggacagtgagaatactccggtcaaaggagggactatg
gctgacctggatgagctggaggaagatttcacaggaagggatgatgaggagatggctcgc
ctgtcagagggagacgacaacatcccagaacaaacccatcatatcataataccaagttac
acgtcttggttcaataacaacagcattcacgcaatagagaaacgcgcattgcctgaattc
ttcaatggaatgaataaatccaaatcgccagaaatctacctggcataccgtaatttcatg
atcgacacgtaccggctaaacccccaggaatacctgagctccacatcctgcagacgcaac
ctcaccggggacgtctgtgctgtaatgagggtccatgcatttttggagcagtggggattg
attaactaccaggtggatgcagaaagcaggcccctccccatgggacccccgccgactcct
catttcaacgtactagctgacacaccatccgggctagcccccctacaacacaaacccctg
caggtgtccgcctcgcagcacatgttgtttttcccggaaaagagcaaagagaagcctcta
gactgccagaactttggtctgcgctccgacatctacacaaagaaacaccctaagactaaa
ggtacaagtgcaggaagggaatggacagagcaagagacgctcttgctattagaggcctta
gagatctacagagacgactggaacaaagtttccgagcaggtgggctccagaacacaggat
gagtgtatcctccacttccttcgtctgccaatagaagacccgtatctagaagactcctcg
gcctccctcggcccactggcgttccagcctgtgcctttcatccaatcagaaaaccccgtc
atgagcactgtggcattcctagcgtccgtggtggacccacgagtggcttcatccgcagct
aaggctgcactggaggagttctccagagtgcagcaggagtcagtggataaagtctctgaa
acgtccaaccagcccaacaaaatagagtcaatggatacagagataattgaaaccaactcc
agctcccatcaggttcctatgagggcagatgggctcacggtggaacccagtttggtcaat
gtagagggagtcctggtcaagagagaaaatgccgaaaatatcctttcagacgagagagat
gtaaggacagatgacgacgagagcctcgagcggggagaagtggatgaggcgagagtgatg
gagcaggatctggtggagggccgagttgtcacggcagcagcagctgctctggcctcagct
gccacaaaggccaagcacttggcagcagtagaggagaggaaggtaaagtccctggtggct
ctgctggtggagacccagatgaagaagctggagatcaaactgaggcactttgaggagctg
gagaccatcatggaccgcgagaaagaggctctggagcagcagcggcagcagcttctgaca
gagagacagacgttccacactgagcagctgaaacaggccgagatgaaggttcgccagcag
agggagcagcaggggcagccaggattcacaatgcagcactcagccttgcctcctccttcg
ggccagcccacgcccaaccgagtgatgccgggtgggggaaacgcccaggcgatggcccct
cgacaccccggggcgcccaatggcatgtacccgtcctcgcagcctgacgggacggcacca
gctcagccgggtcctccggcgtccactcacagctga
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