Pungitius pungitius (ninespine stickleback): 119219895
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Entry
119219895 CDS
T07626
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119219895 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119219895 (ddx5)
03009 Ribosome biogenesis [BR:
ppug03009
]
119219895 (ddx5)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119219895 (ddx5)
Spliceosome [BR:
ppug03041
]
Complex A
U1 snRNP components
U1 related factors
119219895 (ddx5)
Complex B
119219895 (ddx5)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Pre-60S particles
Helicases
119219895 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119219895
NCBI-ProteinID:
XP_037331279
LinkDB
All DBs
Position
12:19616102..19622121
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AA seq
616 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGSGGPPRFGGNRGGGGGGGGGGKFGNPGERLRKKIWNLDELP
KFEKNFYQQHPDVARRSPQDVENYRRAKVITFKGRDCPNPIAKFHEAAFPSYVMDVINKL
NWTEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV
LAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL
EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED
FLKEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKR
RCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKF
VINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLL
QMAEDRGGRSRGGRGGDYRDDRRDRYSGRRDFGGFRDRDNGRGFENGPNKAFGTNSQNGG
YGGSSSSSGNGFSGGSYNGNGQSTFNAPAAAFGGQSFQAPPQTAASHPPFPFPPAPAPQQ
HPPPLVPYPMPPQFSQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggctattccgacagagaccgcggcagggatagagatagaggctatggtggcagc
ggcggacccccccgctttggagggaaccgaggtggcggtggaggaggtggaggaggagga
aagttcggcaatcccggcgaacggctgcgtaagaaaatatggaacctcgacgagctccca
aagtttgagaaaaacttttaccaacagcatccagatgttgcccgcaggtctccgcaagac
gttgaaaattataggagggctaaagtaatcacatttaagggaagagactgtccaaatccg
attgccaaattccacgaggccgcctttccatcttatgtgatggatgtgatcaacaaattg
aactggactgaaccaacacccattcaggctcaaggctggcccctagcccttagtgggaaa
gatatggtcggcattgcacagaccggttcaggaaagacactttcctatttgttgcctgca
attgtgcacatcaaccaccagcctttcctggaacgtggagatggccccatctgcttagtg
ttggcgccaacccgtgagctggcacagcaggtgcaacaggtggctgcagagtatggcaga
gcttctcggctgaagtctacctgcatctacggtggagcacccaagggaccacagattcgt
gacctggaaaggggtgtggagatctgcattgccactccaggaaggctcatcgacttcctt
gaggccggaaaaacgaacctccgtcggtgcacttaccttgtgctggatgaggcagacaga
atgctcgacatgggctttgagcctcagatccggaaaatcgtggatcaaatcaggcctgac
cgccagactctgatgtggagtgccacttggcccaaagaggtgcgtcagctggcagaggac
ttcctgaaggagtacgtccagataaatgttggggccctgcagctcagtgccaaccacaac
attctgcagattgtagacgtctgtaatgatggcgagaaagagaacaaactcatccgtctg
cttgaggaaatcatgagtgagaaggagaacaagacgatcatctttgtagagacgaagagg
cgctgtgatgatctcaccaggaggatgagaagggatgggtggcctgctatgggaatccat
ggagataaaagccaacaggaaagagactgggttctcaatgagttcaaatatggaaaagct
ccaatactcattgctacagatgttgcctccagaggtctagatgttgaagatgtgaaattt
gtcatcaactttgactacccgaacaactctgaggactatatccaccgcattggccgaaca
gctcgtagccaaaagacaggcacagcttacaccttcttcactccgaacaacatgaggcag
gccagcgacctcatctctgtgctccgcgaggccaaccaggcgatcaaccctaagctcctc
caaatggcggaagacagaggaggtcgttcaaggggcggcagaggtggtgattatagagat
gaccgtcgggataggtattctggaaggcgtgattttggtggttttagggaccgggataat
ggcagagggtttgaaaacggaccaaataaggcctttggcacaaattcgcagaacggaggc
tatgggggcagcagcagcagcagtggaaacggcttcagtggaggcagctacaatggtaat
ggacagtcaacctttaacgccccagctgcagccttcggaggccagagtttccaggccccg
ccacagactgctgcgagtcatcccccattccccttccccccggcaccggctccgcagcag
catcctccaccgctggtgccgtaccccatgcctcctcagttctctcagtaa
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