Pungitius pungitius (ninespine stickleback): 119219904
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Entry
119219904 CDS
T07626
Symbol
cacna1ha
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04010
MAPK signaling pathway
ppug04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119219904 (cacna1ha)
04020 Calcium signaling pathway
119219904 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ppug04040
]
119219904 (cacna1ha)
Ion channels [BR:
ppug04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
119219904 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF3043
Motif
Other DBs
NCBI-GeneID:
119219904
NCBI-ProteinID:
XP_062422176
LinkDB
All DBs
Position
12:1688860..1738461
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AA seq
2088 aa
AA seq
DB search
MTDGEGRVRFQFAECPEGQEEAREEVRLAIPTPCRKDAAGPDGDPGGGREDDDDEEEEDE
EEGEEEEEEVESSGKRRAADRGDGGEWSPEAREAREGQEPQPDAGVGPALGVRIRAPLRD
PDCASEEEEQQQPYPALAPEAFFCLKQTTRPRNWCLRLVCNPWFEHVSMLVILLNCVTLG
MFQPCEDVACQAEWCRILQVLDDCIFAFFAVEMVIKMVALGIFGPNCYLGDKWNQLDFVI
VMAGVLEYSLDGHNASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCF
FVFFIFGIVGVQLWAGLLRNRCFLGEDVRTMYNLSMSPYYQPEEGEDSPFICSAPRENGM
LRCHSVPPLAEGGADCSLAAPPRAGVNGCVNWNQYYNVCRAGELNPHKGAVNFDNIGYAW
IAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVSTSSHLFPSSFFFDPEELTDVLE
ISNIVFTSMFVLEMGFMLLAFGLFGYIRNPYNIFDSIIVIISVWEIIGQADGGLSVLRTF
RLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFTFSILGMHLFGCKFSLQTE
NGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFGNYVL
FNLLVAILVEGFQAEGDANRSESDDDKKSDNFEEDEKVDQLRHTELKMYSLMMTANGVSP
PIIMRTAATPMPTPKSSLGPESVLEEVAPPYGEAGLGFCDAGSIHAGSRRGSSASVDPSA
YDQHSLGLSSPGRRSPLPPRSWGSRRSSWNSLGRAPSLKRRDASGERESLLSGEGGEEAG
EEGDGREGEAGGADRPRPESLELLQASALCPSVTAEYGDCNGRTATYDPNAHAQPKDDSS
PEDDIDDDSSFWHWMRKELENMKPRWCREHEDWTMYLFSPQSKCRGWCQSVISHXLFDHV
VLVFIFLNCITIALERPDIQLQSKERVFLSVSNYVFTVIFLAEMAVKVVALGFCFGKQTY
LQSSWNVLDGLLVLVSLVDILVSMAYTGGNRILGILRXLRLLRTLRPLRVISRAPGLKLV
VETLITSLRPIGNIVLICCAFFIVFGILGVQLFKGKFYHCEGLDMKNITNKSDCLQANYR
WXRRKYNFDNLIQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFL
LIVSFFVLNMFVGVVVENFHKCRQDXEEEEARLREEKRLKMIEKKRRSKENGGAGAKQRP
YYADYCPLRLYIHTLCTSNYLDLFITFIICVNVFTMSIEHYNQPQYLEEVLKYCNYVFTC
IFVFEAVLKVVAFGIHRFFKDRWNQLDVAIVALSIMGITLEELKMSSALPINPTIIRIMR
VLRIARVLKLLKMATGMRSLLDTVMQALPQVGNLGLLFMLLFFIYAALGVELFGKLECTE
HNPCEGLSRHATFDNFGMAFLTLFRVSTGDNWNGIMKDTLRECHPEERHCLAYLPLVSPM
YFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIALEMAMERERKLSTTSIN
SSVGGAYVGPCPQSPGQEEEVQCGDLLSSRKMSVSRMHSLPNDSYMFRPVRPASAPSPLE
EAELGPQHQHSGSVTSVPSPPGESRALLLQVPDVSPVHPRQPPSLPRIAPPAPSPSPRAL
RKQVAVKLDSVDTAHLPPLTPPSPSSALPPPSPSSLRPPLSSPSSLPPSPTSPSLLLPPP
PSPRLPLRPASLRRPRPPSPASLCDPADEEVCHITSSARHRRRDEEEEGAGQESRGKVGR
SHSLSPYTTPHSLNAASPSSHLPPPLPPPSSRSALSLLGAGETSRGDLRPGVSSVGGRAL
PGGPPSLSAGYPDDQRRHSIEVCLPQAAPPGGERPARWTEKGAQAFPVRVQSVGGGHRKK
KMSPPCISIHPPCEREHPQTASPPKLADCSMLLRRRTPSYDLSLHAQDVPADPQARSPLR
APLPAPLTPSPASTPPHVPISPNVFVQPHAPLVPRPFSQAAHSLSPGARHPPLAGEYIPL
PPQFTFDQPQNRYVSGLSDADAATCSSPFDTRLGSGAGFSAKNRRTAQ
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtgcgcttccagttcgccgagtgcccggaagggcaggag
gaggcgcgggaggaggtgaggctcgctataccaacgccctgcaggaaggacgcagccggt
cccgacggtgaccctggaggaggccgtgaggatgatgatgatgaggaggaggaggatgaa
gaggaaggggaagaggaggaggaggaggtggagagcagcggtaagaggagggctgccgac
cggggagacggcggcgaatggagccccgaggcccgggaggcgcgcgagggccaggagccg
cagccggacgccggggtcgggccggcgctgggagtccgcatcagggctcctctccgcgat
ccggactgcgcgtcggaggaggaggagcagcagcagccgtaccccgccctggcccccgag
gccttcttctgcctgaagcaaaccaccaggcctcgcaactggtgtctccgcctcgtctgt
aacccgtggttcgagcacgtgtccatgctggtcatcctgctcaactgcgtgactctgggg
atgttccagccctgtgaggacgtcgcctgccaggcggagtggtgccgcatcctgcaggta
ctggatgattgcatctttgctttctttgccgtggaaatggtcatcaagatggtggcgctg
ggaatttttggccccaattgttacctcggcgacaagtggaaccagctggacttcgtcatt
gtcatggcaggggttttggagtattctctggacggccacaacgccagtctgtcggccatc
cggaccgtccgagtgctccggcctctgcgagccatcaacagggtaccaagcatgcgcatc
ttggtgacgctgctgctggacaccttgcccatgctgggaaacgtcctgctcctctgcttc
ttcgtcttcttcatcttcggcatcgtgggggtgcagctgtgggcgggactgctgcgcaac
cgctgcttcctgggagaggacgtccggacaatgtacaacctgtccatgagtccctactac
cagccggaagagggcgaggacagccccttcatctgctcggccccccgcgagaacggcatg
ctgcgctgccacagcgtgccccccctggccgagggcggggccgactgctcgctggcggcg
cctccgcgggccggcgtcaacggctgcgtcaactggaaccagtactacaacgtgtgtcgg
gccggggagctcaacccgcacaagggggcggtgaacttcgacaacatcggctacgcgtgg
atagccatattccaggtcatcaccctggaaggatgggtagatatcatgtactatgtcatg
gacgctcactccttctacaattttatatattttatactgctcattattgtaagtacctcc
tcgcatttattcccttcctcttttttttttgatccagaggagctgacggatgtgttggag
atcagtaacatcgtcttcaccagcatgttcgtgctggagatgggcttcatgctgctggcg
ttcggcctgttcggttacatcaggaacccgtacaacatcttcgacagcatcattgtgatc
atcagcgtgtgggagatcatcggccaggcggacggcggcctgtcggtgctgcggaccttc
cgcctgctgcgggtcctgaagctggtccgcttcctgccggctctgaggagacagctggtg
gtgctgatgaagaccatggacaacgtggccaccttctgcatgctgctgatgcttttcatc
ttcaccttcagcatcctgggcatgcacctcttcggctgcaagttcagcctccagacggag
aacggagacaccatccccgaccgcaagaactttgactcgctgctctgggccatcgtcacg
gtgttccagattctgacccaggaggactggaatgtggtgctgtacaacggcatggcctcc
acctcgccgtgggcggcgctctacttcgtcgctctcatgactttcggcaactacgtgctc
ttcaatttactcgtggccatcttggtagagggcttccaggctgagggcgatgctaatcgc
tcagagtcagacgatgacaaaaaatcggacaactttgaggaggacgagaaggtggatcag
ctccgacacactgagctaaagatgtactctctgatgatgacagccaacggcgtgtctcct
cccataatcatgcgcacggcggccacccccatgcccacgccgaagagctccctgggcccc
gagtcggtcctggaggaggtggcgcccccgtacggggaggcggggctcgggttttgcgac
gcgggaagcatccacgcagggtctcgccgcggaagctccgcctccgtggacccttcggcc
tacgaccagcactccctgggcctctccagtcccggccggcgctcccctctgcccccccgc
tcgtgggggagccggcgctccagctggaacagcctgggaagggcgccgagcctcaagagg
cgagacgccagcggggagagggagagcctgctgtctggggaggggggggaggaggcggga
gaggagggagacggccgggagggcgaggccgggggcgccgaccgcccgcggccggagtcc
ctggagctgctgcaggcctccgccctctgcccctccgtcacagcggagtacggggactgt
aacggcaggaccgcgacctacgaccccaacgcgcacgcccagcccaaggacgactcctcg
ccggaggacgacattgacgacgacagttccttctggcactggatgagaaaagagctggag
aacatgaagccccgctggtgcagagagcacgaggactggaccatgtatttgttctctccg
cagagcaaatgccgtgggtggtgccaaagtgtgatctctcacnaattgtttgaccacgtg
gttctggttttcatcttcctcaactgcatcaccatcgctctggaaagacctgatatacag
ctccagagcaaggagcgagtgttcctgagcgtgtccaactacgtgttcactgtgatcttc
ctggcggagatggccgtgaaggtcgtggctctgggcttctgcttcgggaagcagacgtac
ctccagtccagctggaacgttctggacgggttgctggtgctggtgtctctggtggacatc
ctggtctccatggcctacaccggcggcaaccggatcctgggcatcctccggntgctgcgc
ctgctgcggacgctgcgcccgctgagggtgatcagccgagctccgggactgaagctggtg
gtggagacgctcatcacctccctccgacccatcgggaacatcgtcctcatctgctgcgcc
ttcttcatcgtcttcggcatcctgggcgtccagctgttcaaagggaagttctaccactgt
gaaggcctggacatgaagaacatcaccaacaagtcggactgcctgcaggccaactaccgc
tggnatcgcaggaagtacaactttgacaacctgattcaggctctcatgtccctgttcgtg
ctgtcgtgtaaggacggctgggtgaacatcatgtacgacgggctggacgcggtgggagtg
gaccagcagcccgtgaggaaccacaacccctggatgctgctctacttcatctccttcctg
ctgatcgtcagcttcttcgtcctcaacatgtttgtcggcgtcgtggtggagaacttccac
aagtgccggcaggacncagaggaggaggaggcccgcctacgggaggagaagaggctcaaa
atgatagagaaaaagcgcaggagtaaggagaatggtggagctggggccaagcagaggcct
tactacgccgactactgccccctgcgcctctacatccacacactgtgcaccagcaactac
ctggacctcttcatcaccttcatcatctgcgtcaacgtcttcaccatgagcatcgagcac
tacaaccagccgcagtacttggaggaggtgctgaagtactgtaactacgtgttcacctgc
atcttcgtcttcgaggcggtgctcaaagtcgtggcgttcggcatccaccgcttcttcaag
gacaggtggaatcagctggacgtcgccatcgtggcgctctccatcatgggcatcacgctg
gaggagctgaagatgagctcggcgctgcccataaatcccaccatcatcaggatcatgagg
gtcctccggatagcacgagtgctgaagctgctgaagatggccacggggatgcgctcgctg
ctggacaccgtcatgcaggcgctgccgcaggtgggaaatctgggcctcctcttcatgctg
ctgttcttcatctacgctgcgctgggagtggagctctttggcaaactggagtgcactgaa
cacaacccgtgcgaggggctgagtcggcacgccaccttcgacaacttcgggatggccttc
ctgacgctgttccgcgtgtccacaggagacaactggaatgggattatgaaagacacgctg
cgggagtgccaccccgaggagcgccactgtctcgcctacctgcctctggtctctccgatg
tactttgtcacgttcgtgctcatggcccagttcgtgctggtcaacgtggtcgtggcggtt
ctgatgaaacatctggaggagagcaacaaggaggctaaagaggacgcagagatggacgca
gagatcgccctggagatggcgatggagagggagcgcaagttaagcacaacttccatcaac
agctcggtgggcggagcctacgtcgggccgtgcccacagtcacctggacaggaggaggag
gtgcagtgcggggacctgctgtcgtcaaggaagatgtccgtatccaggatgcactctctg
cctaacgacagctacatgttccggcccgtgcggcccgccagcgccccctcccccctggag
gaggcggagctcggcccccagcaccagcactcaggctcggtgacgtcggtcccctccccg
ccgggggagagccgcgcgctgctgctgcaggttccagacgtctcccccgttcacccccgg
cagcctccctccctgccgcgcatcgccccgcccgcgcccagcccctccccccgggccctg
cggaaacaggttgccgttaaattggattcggtggacacggcccacctgccccccctgact
cccccctcgccctcctccgccctgcctcctccgtctccctcctccctgcgtccgccgctg
tcctccccctcctccctccctccgtcgcccacgtccccctcgcttctcctccccccgcct
ccctccccgcgtctccccctgcgccccgccagcctccggaggccccgccctccctcgccc
gcctccctctgcgacccggcggacgaggaggtgtgtcacatcacgagctccgcccgccac
cggcggagggacgaggaggaggagggggcggggcaagagagcagggggaaggtgggccgc
agccactccctctccccctacaccaccccgcactccctcaacgccgcctccccctcctcc
caccttcctcccccgctgccgcctccctcctcgaggagcgcgctcagcctgctgggggcg
ggcgagacgagccgcggcgaccttcggccgggggtgtcgagcgtgggcggccgcgccctc
ccgggcggaccgccctcgctctccgccggttaccccgacgaccagcggcgccactccatc
gaggtctgcctcccgcaggccgccccccccggcggcgagcggccggcccgctggacggag
aaaggcgctcaggcgtttcccgtgagggtgcagtcggtcgggggcggccacaggaagaag
aagatgagccccccgtgcatctccatccacccgccctgcgagagggagcacccccagaca
gcctcccccccgaagctggccgactgcagcatgctgctgagacgcaggacgccatcctac
gacctgagcctgcacgcgcaggacgtcccggccgacccgcaggcgcgctccccgctgcgc
gcccccctccccgcgccgctgacgccctcgccggcgtccaccccgccgcacgtccccatc
agccccaacgtcttcgtccagccgcacgcgcctctggtcccgaggccgttctcgcaggca
gcgcactccctgtcccccggcgcgaggcacccccccctcgcgggggagtacatccccctc
cccccccagttcaccttcgaccaaccacagaacaggtacgtgagcggcctgtcggacgcc
gacgccgccacctgctcctcccccttcgacaccagactgggaagcggggcggggttcagc
gccaagaacaggaggaccgcccagtga
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