Pungitius pungitius (ninespine stickleback): 119220239
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Entry
119220239 CDS
T07626
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04514
Cell adhesion molecule (CAM) interaction
ppug04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
119220239 (lrrc4ba)
04517 IgSF CAM signaling
119220239 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119220239 (lrrc4ba)
Cell adhesion molecules [BR:
ppug04515
]
Immunoglobulin superfamily
NGL family
119220239 (lrrc4ba)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
LRR_9
ig
V-set
Ig_2
LRRNT
VEGFR1-3_N_Ig-like
Ig_6
Pam3_Gp34
Motif
Other DBs
NCBI-GeneID:
119220239
NCBI-ProteinID:
XP_062422134
LinkDB
All DBs
Position
12:complement(3711790..3727614)
Genome browser
AA seq
729 aa
AA seq
DB search
MRIATLTCLPGPPPFLFLLAQLLLRLLLPGPESVGAASPCPSLCTCSNQASRVICTRQNL
EEVPESISINTRYLNLQENSIQVIKSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSHAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDF
ISDAAFVGLVNLRYLNLGMCGLKDIPKLTALVRLEELELSGNRLEIIRPGSFQGLVSLRK
LWLMHSQVSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWICNC
DVLWLSWWLKETVPSNTTCCARCHAPPFLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTSTSTTSVNWITPNGTLMTHGSYKVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNAAGNTTATAVLNVTAADASVNYTYFTTVTVETVETPGDEDSAFASNETFIHVHPGPT
PSGHLWPGGVPTTASSLSAGWSSSSPQTTRPTFTVPITEPGFSGLDDVMKTTKIIIGCFV
AITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDELGAGGRGSGISGGSTVTQGG
SSGIGGGQSLRLHHPEIVNLPNLARSEHLNHYYKTHHFNNNMMGLGMGPGSGVGLNNNNN
PSPCSQSTSISCSQVPTGGGMAAGGTLPSSVALPQLGLHSSLKGIMGKSQKEALLFKSSS
KENVQETQI
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgccacgctgacctgcctccccggccctccccccttcctctttctattggcc
cagctgctgctgcggctcctcctccccgggccggagtcggtgggagccgcctccccctgc
ccctccctctgcacctgctccaaccaggccagccgagtcatctgcaccaggcagaacctg
gaggaggtgcccgaaagcatatcgatcaacacgcgatacctcaacctgcaggagaactcg
atacaggttatcaagtcagacactttcaagcacttgaggcaccttgagatcctccagctc
tccaagaatcagatccgtcagattgaagtcggagcgttcaatggcctccccaacctcaac
acgctggagctcttcgacaaccgcctcacactggtgccatcacatgccttcgagtacctc
agcaagctgcgggagctgtggctgcgcaacaaccccatcgagactctgccgggctatgcc
ttccaccgcgtgccctcgctacgccgcctggacctcggggagctcaagaagttggacttc
atctccgacgcagccttcgtgggcctcgttaatctacgctacctgaacctgggaatgtgc
gggctgaaggacattcccaaactgacggccctcgtgcgtttagaggagctcgaactgtcg
ggcaacaggctggagattatccgaccgggttccttccagggcctggtgtccctgcgtaag
ctctggctgatgcactcgcaggtgtccgtcatcgagcgcaacgccttcgacgacctgaag
agcctggaggagctcaacctgtcgcacaactccctgcactccctgccccacgacctcttc
acaccgcttcaccagctggagagagtgcacctcaaccacaacccgtggatctgcaactgt
gatgtcctttggcttagctggtggttgaaagagacggtgcccagcaacaccacctgctgc
gcccgctgccacgctcctccgttcttgaagggcaagtacatcggggagctcgaccagagc
cacttcacctgctacgcgccggtcatcgtagagccccccacggacctcaacgtcactgag
ggcatggccgctgagctcaagtgtcgcacgagcacctcgacaacgtccgtcaactggatc
acccccaacggcacgctgatgacccacggctcgtacaaggtgcggatatccgtcctgcac
gacggcacgctcaacttcaccaacgtcaccctgcgagacacggggcagtacacctgcatg
gtcaccaacgccgccggcaacaccaccgccaccgctgtcctaaacgtcaccgcagcggac
gccagcgtgaactacacctacttcacgacggtcaccgtggagacagtggagaccccggga
gacgaagactccgcgttcgccagcaatgagacattcatccatgttcaccctgggcccacg
ccctcgggtcacctgtggccaggaggcgttcctacaactgcctcctctctgtcagcgggc
tggtcctcctcctctcctcagaccacccgacccaccttcactgtgcccatcaccgagccg
ggcttctcaggcttggatgacgtcatgaagaccaccaagatcatcataggctgcttcgtg
gccatcaccttcatggcagcagtgatgctggtggtcttctacaagctgaggaagcagcac
cagctacataaacaccacggcccggctcgcgccatcgagatcatcaacgtggaggatgag
ctgggggccggtggtcgaggcagcggcatctcgggaggctccacggtgacgcagggcgga
agcagcggaataggaggaggccagagcctcaggctgcaccacccggagatagtcaacctg
ccgaacttggcccgatcggagcacctaaaccactactacaaaactcatcacttcaacaac
aacatgatgggcctgggcatgggcccagggtctggcgtgggcctcaacaacaacaacaac
ccctcgccttgctctcagagcacgtccatatcctgttcccaggttccgaccggtggagga
atggccgcaggtggcaccctgccctcctctgtggccctgccccagttgggtctccacagt
tccctgaaaggcattatggggaaaagccaaaaggaggcgctgctttttaagagcagctct
aaggaaaatgtgcaagagactcaaatttga
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