Pungitius pungitius (ninespine stickleback): 119220413
Help
Entry
119220413 CDS
T07626
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04120
Ubiquitin mediated proteolysis
ppug04137
Mitophagy - animal
ppug04144
Endocytosis
ppug04340
Hedgehog signaling pathway
ppug04350
TGF-beta signaling pathway
ppug04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119220413 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
119220413 (smurf1)
04350 TGF-beta signaling pathway
119220413 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119220413 (smurf1)
04137 Mitophagy - animal
119220413 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
119220413 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119220413 (smurf1)
04121 Ubiquitin system [BR:
ppug04121
]
119220413 (smurf1)
03029 Mitochondrial biogenesis [BR:
ppug03029
]
119220413 (smurf1)
Enzymes [BR:
ppug01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
119220413 (smurf1)
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
119220413 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
119220413 (smurf1)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
HECT type E3
119220413 (smurf1)
Mitochondrial biogenesis [BR:
ppug03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
119220413 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
119220413
NCBI-ProteinID:
XP_037332325
LinkDB
All DBs
Position
12:12159200..12172299
Genome browser
AA seq
729 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDPTGA
AGGGNCRLDSPGQEGRLQTQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQQSQAKESSQAPQMDVGGEEGVGGGVGGGGEVDVAARYERDLVHKLKLLRHE
LSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWL
YLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLAVFHGHYING
SFTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVEHNAFGKFSQH
ELKPNGRNLPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFSELIPQHLLKPFDHKEL
ELIIGGLGKIDLSDWKTNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLLQFVTGSTRVP
LQGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDVPPYESYEKLYEKLLTAV
EETCGFAVE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactcgaaggaacgggtccagcatcaaaatccgactgacagtatta
tgtgccaagaacctcgcaaagaaagacttctttcgcctgccggatccatttgccaaggtt
gtggtggacggatcaggccaatgccactccacagatacagtcaagagcacactggacccc
aaatggaatcagcactatgacctctacatcggaaagaccgactccatcaccatcagcata
tggaaccacaagaagatccataaacgacaaggggcgggcttcctgggctgcatacgactg
ctctcaaatgccatcagcaggctaaaagacacggggtaccagcgtctcgatctatgtaag
ctgaacccatcggacagtgacgcagtgcgggggcagatagtagtgagcttacagacgaga
gaccgcatcggcagcggaggtcccgtggtggactgtagagggctgttggaaaatgatggg
cccgtgttcgaggggtgttttagcgaagagccgctgccctactcggaccccactggggcg
gcggggggcgggaactgtcgactcgactcgcccggccaggagggccgtcttcagacgcag
cgaatcagagggcaggactcacgaggccatggccacacccctcagaacagacctcatggg
caccaaccgcctgacctgccggagggatacgagcaacggacgacggtgcagggccaggtt
tacttccttcacacacagacgggcgtcagcacctggcacgaccctcggatacctcgggac
ctcgccagcgtgagctgcgaggagctcgggccgctgccggtgggctgggaggtccggagc
acggtgtcgggccggatctactttgtggaccacaataaccgaaccacgcagttcaccgac
ccgcgcctacacaccatcatcagccagcagtctcaagccaaggaatcttcacaagccccc
cagatggatgtggggggcgaggaaggggtaggtggaggagtcggcggaggaggcgaagta
gacgtggccgcacgctacgagcgggacttggtccacaagctgaaactgctccgccacgag
ctgtcgttgcagcagcctcaagcgggacactgtcggatagaggtttcccgggaggagatc
tttgaggagtcgtatcggcagataatgaagatgaggcccaaagacctgaagaagcgtctg
atggtgaagttcaggggagaggagggcctcgactatgggggggtggccagggagtggctg
tacctgctgtgtcatgaaatgttgaacccctattacggcctgttccagtactccacagac
aatatctacacactacagatcaaccctgactcctccatcaaccctgaccacctgtcatat
ttccactttgtgggccgtgtgatgggcctagcagtttttcatggccactacatcaacggg
agcttcacgctgcccttctataaacagctgctaggcaaacccatccagctcaacgacctg
gagaccaccgacccggagttgcacaagagcctcgtctggatattagagaacgacatcact
tcagtcctcgaccacacgttctgcgtggagcacaatgcctttgggaagttctcgcaacac
gaactcaaacctaatggtcgcaatctccccgtcacagaggagaacaaaaaagaatacgtg
aggctttatgtgaactggaggtttatgcgtggaattgaagcccagtttctggctctacag
aagggattcagtgagctcatcccccagcacctcctcaaaccctttgaccacaaagaactt
gagctgatcattggagggttggggaagatagatctttccgactggaaaacaaacacgcgc
ctcaagcactgcacgagtgaaagcaacgtggtgcggtggttctggcaggcggtggaggcc
ttcagcgaggagaggagaggacgcctcctgcagtttgtcaccggctccaccagggtccct
ttacaagggttcaaggcgcttcagggttctacaggttctgcaggaccaaggctcttcacc
atccacttgatagacgccaacacagacaacctgcccaaggctcacacgtgttttaaccgc
atagacgtccctccctatgaatcttacgagaaactctacgagaaattgctgacggccgtg
gaggagacgtgtggctttgctgtggagtga
DBGET
integrated database retrieval system
