Pungitius pungitius (ninespine stickleback): 119220431
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Entry
119220431 CDS
T07626
Symbol
sox10
Name
(RefSeq) transcription factor SOX-10 isoform X1
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119220431 (sox10)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
119220431 (sox10)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
119220431
NCBI-ProteinID:
XP_037332351
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All DBs
Position
12:20070679..20078447
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AA seq
496 aa
AA seq
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MSREEQSMSDVELSPGMSDDSRSLSPGHPCGAAGGRDSPLGGRQRPQPAGLDDSVAGCSS
IKSEDEDERFPAGIRDAVSQVLNCYDWTLVPMPVRVNNGSKSKPHVKRPMNAFMVWAQAA
RRKLADQHPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRKQHKKDYPDYKYQPRRR
KSGKPGSGSGSEADGHSEGEVSHNQPHYKGLQLDVALIRGAGSPLADGHHPAGHSPPTPP
TTPKTEPQPGKVGDGKREGAGKGGLRGAMGPEGSSGAPGSGKPHIDFGNVDIGEMSHEVM
ANMEPFDVNEFDQYLPPNGHPGVGQSSGAGAAATPSPASPYTYGISSALAAAGGHSAAWL
SKQQQQQQPLQHHGPPLGADPSKAQVKSEAGGAGGHFAEAASVGSHVTYTPLSLPHYGSA
FPSLASRAQFAEYSDHQASGSYYAHSSQASGLYSAFSYMGPSQRPLYTAITDPASVPQSH
SPTHWEQPIYTTLSRP
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtccagagaggagcagagcatgtcggacgttgagctcagtcccgggatgtcagacgac
agtcgctccctgtcgccgggacatccctgcggcgccgccggcgggcgggactcgcccctg
ggcgggcggcagcggccgcagccggcgggtctggacgactcggtggcgggctgctcgtcc
atcaaatccgaggacgaggacgaacgcttccccgcggggatccgcgacgcggtgagccag
gtcctcaactgctacgactggaccctggtgcccatgcccgtgcgcgtcaacaacggcagc
aagagcaagccgcacgtgaagaggccgatgaacgccttcatggtgtgggcgcaggcggcg
cgcaggaagctggccgaccagcacccgcacctgcacaacgcggagctcagcaagaccctg
gggaagctgtggaggcttcttaacgagagcgacaagcgacccttcatcgaggaggccgag
cggctgcgtaagcagcacaagaaggactaccccgactacaaataccagccacgacgccgc
aaaagtggaaagcccggttctgggtcaggaagtgaggccgatggccattcagagggtgag
gtcagccacaaccagccccactacaagggcctccaactggatgtggccctcatcagagga
gccgggtcacctctggcagatgggcaccaccctgcaggtcacagtcctcccacccctccc
accactcccaagaccgagcctcagcctgggaaggtgggggatggaaagcgggagggggct
ggcaaggggggcttgcggggcgcgatgggcccagaggggagctcaggtgctccgggatct
ggaaaacctcacatcgactttggtaacgtggacattggggagatgagccacgaggtgatg
gccaacatggagcctttcgacgtcaatgagttcgaccagtaccttcccccaaatggacac
ccgggggtcgggcaaagttctggggcgggagcggccgctacaccttccccggcctctccg
tacacctacggcatctcctcggctctggcggcggccggtggacactcggcggcctggctc
tccaagcagcagcagcagcagcagccgctgcaacaccacggcccgcctctgggcgcggat
ccctccaaagcccaggtcaagagtgaggccgggggtgccgggggtcactttgcagaggcg
gcctctgtaggttcccatgtcacctatacccccctcagccttcctcactacggctctgcc
ttcccctcactggcctccagggcccagttcgcagagtactccgaccaccaggcctcaggg
tcgtattacgctcactccagccaggcctcagggttgtactctgccttctcttacatgggg
ccctcccagaggcccctgtacaccgccatcaccgacccggccagcgtgccgcagtcacac
agccccacgcactgggaacagcccatctacacgaccctgtcgcggccatga
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