Pungitius pungitius (ninespine stickleback): 119220783
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Entry
119220783 CDS
T07626
Name
(RefSeq) transcription factor Sox-8
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119220783
Transcription factors [BR:
ppug03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
119220783
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
119220783
NCBI-ProteinID:
XP_037332921
LinkDB
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Position
12:complement(7906341..7909998)
Genome browser
AA seq
465 aa
AA seq
DB search
MLKMTEDHDKCGSDQPCSPSGTNSSMSQDESDSDAPSSPTGSDGQGSLLAGLGKKLDSED
DDRFPACIRDAVSQVLKGYDWSLVPMPVRGSGSLKNKPHVKRPMNAFMVWAQAARRKLAD
QYPHLHNAELSKTLGKLWRLLSEGEKRPFVDEAERLRVQHKKDHPDYKYQPRRRKNMKPG
QSDSDSGAELAHHMYKAEPGMGGLAGMTDGHHHPEHAGQQHGPPTPPTTPKTDLHHGLKQ
DLKHEGRRLADSNRQNIDFSNVDISELSTDVISNMETFDVHEFDQYLPLNGHASGSSALP
SDHGHGQAPVPGGSYASSYGHAGTNGSVWSRKSAVSSSAPSAGELGQHRLHIKTEQLSPS
HYSEHSHGSPSHSDYGSYGGQACVTSATSAAASFSSSQCDYTDLQGSNYYNPYSGYPSSL
YQYPYFHSSRRPYSSPILNSLSMAPTHSPNASSWDQPVYTTLSRP
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaatgaccgaggatcatgacaagtgtggcagcgaccagccgtgcagtccgtcg
ggcacgaacagctccatgtcccaggacgagtccgactccgacgctccgtcctcaccgacg
ggctccgacggtcaaggctccctgctcgccggtctgggcaagaaactggactcagaggat
gacgaccggttcccagcctgcatacgggacgccgtctctcaggtcctcaaaggatacgac
tggtccttggtgcccatgcccgtgaggggcagcggatctttgaaaaataaacctcatgtc
aaaagacccatgaatgcgttcatggtttgggcgcaagcggcccgcagaaagctggcggat
caatatcctcacctgcacaacgccgaactgagcaagacacttgggaaactgtggcgtttg
ctctcagaaggtgagaagaggccatttgtagatgaagcagagaggctccgggttcagcac
aagaaagaccatccagactacaagtaccagccccggagacggaagaatatgaaaccgggc
cagagcgactcagactcaggagcggaactggcacatcacatgtacaaagctgaaccaggg
atgggaggacttgcagggatgaccgatggacaccaccaccctgagcatgcagggcagcag
cacggtccccccacgccgcccactactcccaaaaccgacctgcaccacgggttgaaacag
gatctgaaacacgaaggtcgtcgtcttgctgacagcaacaggcaaaacatcgactttagc
aacgtagacatctcagagctcagcactgatgtcatcagcaacatggagaccttcgacgtg
cacgagttcgaccagtacctcccgctcaacggccacgcctcgggctcctccgccttgccc
tcagaccacggccacggccaggctccggtgcctggcggctcctacgcgtcctcgtacggt
cacgcgggcaccaacggctcagtgtggagccgcaagagcgccgtgtcctcctccgccccc
tcggccggcgagctgggccagcaccggctccacattaaaacggagcaactgagccccagc
cactacagcgagcactcccacgggtcgccctcgcactccgattacggctcctacggcggc
caggcctgcgtcacctcggccacgtcagccgcggcctcgttctccagctcccagtgtgac
tatactgacctgcagggctccaactattacaacccttactcgggctacccgtccagcctc
taccagtacccgtacttccactcatccaggcggccctacagcagcccgatcctcaacagt
ctgtccatggctcccacccacagccccaacgcctccagctgggaccagccggtctacacc
acgctgtctcgaccttga
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