Pungitius pungitius (ninespine stickleback): 119220842
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Entry
119220842 CDS
T07626
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119220842 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119220842 (xab2)
03041 Spliceosome [BR:
ppug03041
]
119220842 (xab2)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119220842 (xab2)
Spliceosome [BR:
ppug03041
]
Complex B
Other components
Prp19-related factors
119220842 (xab2)
Complex C
119220842 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
119220842
NCBI-ProteinID:
XP_037333008
LinkDB
All DBs
Position
12:complement(6115444..6121936)
Genome browser
AA seq
846 aa
AA seq
DB search
MASLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKATLNLIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPSYEEINNCHERALVFMHKMPRLWLDYCQFLVSQSK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTIDPLKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVFKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDATERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVHFMSSQMMKATTGTVSDLAPGQVGIDDMKMLEQKAQMLAAEAEQDKP
KPKEKILFVRSDTSRSELAELSKQANPDEIDIDDEDDEDEENQGPEEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcctcacttaatggaaaaccagatgttatgtttgaagacgatgatctgccatatgaa
gaggagatcatcaggaacccatactcggtcaagtgctggatgcgttacatcgaattcaaa
cagaatggagccaaagccaccctcaacctgatctacgagcgcgctctgaaggagttacct
ggcagctacaagctgtggtacaactatctgagagagagacgtaaacaagtcaaagggaaa
tgtatcactgaaccaagctatgaagagatcaataattgccatgaaagggcattggtgttc
atgcacaagatgcccaggttatggctcgattactgccagtttcttgtatctcaaagcaag
atcacaagaagtcggcaaacatttgaccgagccctccgagctcttcctgttactcagcac
ccgcgcatctggcctctgtatctccgctttgtccgtaaccttcccctgcctgagactgca
atccgagtgtaccgcaggtaccttaagctttctcctgaaaatgcagaggaatacattgac
tacttacgatctgttggccgcttggatgaagcagctgtgcgacttgcagctgttgtcaat
gacgaaagctttgtgtccaaagagggcaaatccaactatcaactatggcatgagctgtgc
gacctgatctcccagaaccctgataaagtgacgtctctcaaagtaggggccattatccga
ggaggcctcactcgattcactgaccaacttggaaaactctggtgctccttagctgactat
tatattaggagcggtcactttgagaaggcccgggatgtgtacgaggaggccatcctcact
gtggtaacggtgagggatttcacacaagtatttgatagttatgcccagttcgaagaaagc
atgatcgcagcaaagatggagaccacagctgagatgggaaaggatgaagatgaggacata
gacatggagcttagactggcccgctttgagcagctgatagctcgacggcccctcctgttg
aacagcgttctattgaggcagaaccctcataatgttcatgaatggcacaagagggtgaaa
ttgtatgagggcaatccacggcagatcattaacacatacactgaggcagtgcagactata
gatccattgaaggccacggggaaaccacactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagttggatgatgctaggaccatttttgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtatggtgtgaatatggcgagatggagctgcgc
catgagaactatgaacaggcactgcgcatactcaggaaagctactgcaatcccatccaag
aaagcagagtattttgatgcatccgagccagtccaaaacagagttttcaagtctttgaag
gtctggtccatgctggcagacttggaggagagtctaggcactttccagtccaccaaagca
gtttatgatcgcataattgacctccgcatcgccacgccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaagcgtatgagcgtggtatt
gctctctttaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggaaagaagctggagagagcaagagatttgtttgaacaagctttggat
ggctgcccagctaagtttgccaagaccatttacctgttgtatgctaaattggaggaggga
tatggattggcacgacacgccatggctgtctatgaacgagcaacgcaggcagtagatgct
acggagagacatcacatgttcaatatctatatcaagagagcagctgaaatttatggagtc
acgtataccagagccatataccagaaagctatcgaggtccttccagatgagcatgcacgg
gacatgtgtcagcgatttgctgacatggagagtaaacttggtgagattgaccgggccaga
gcaatctactcctactgctcgcagatttgtgacccgcgggtgactgcaaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaggacacgattcgagaaatgctgagg
atcaaacgaagtgttcaagccacatacaacacccaggtccacttcatgtcctctcagatg
atgaaggcgacaacgggcactgtgtctgatcttgctccaggtcaagtaggaattgatgac
atgaagatgctggagcagaaagcacagatgcttgccgcagaggcggagcaagacaaaccc
aagcccaaagagaagattctctttgtcaggagtgacacctctcgcagcgagttggctgag
ctttctaaacaagccaatcctgatgagattgacattgatgatgaagacgatgaagatgag
gaaaaccagggaccagaagaggtgcagcttgaacagaagagcgtccccacagccgtcttt
ggtgggcttaaagaagactaa
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