Pungitius pungitius (ninespine stickleback): 119220912
Help
Entry
119220912 CDS
T07626
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119220912 (casc3)
03015 mRNA surveillance pathway
119220912 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119220912 (casc3)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119220912 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
119220912
NCBI-ProteinID:
XP_037333135
LinkDB
All DBs
Position
12:complement(402721..408910)
Genome browser
AA seq
770 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPTAAKSRVRDPEPPEVTPARVEPKVEAE
SECESEDGVGEAVLSDYDSADPEENGSHSEGAEEEEEAEQYSDEEAPAGEAKPLAAEGPA
EGGEAEQKLVEVAVVEEGEEEKEKDEGEEKDDEEEEEEEEGEEKEEGGKEEKRAEDKENL
AGERQSGDGQESTDDPETKAGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEER
PKGRNRKLWKDEGRWEHDRFREEEQAPKSRGELVAIYGYDIRNGGGTAERPYRQRRPRQS
LSPSRDKRWRDGGGDGPVRTWHSGGGGGGGGLNRGGAPPMSSHAPSTPLASLPQRSSNPS
RPPPSRSRPSHPLPPQYRNNESNAPQMPPRERQGPKAPYDPSGDRGLVIRGGRGGVRSSS
VVIEDIADGDQAAGAVTPSPSAGYQPALPRRQQQEQRGGGADRSVSGLADAQPTTREASP
PAERPPERKSYALARRTRSRPADLGSKQPSVEESAATPPSGAGGKSWAGDEPGQEGRGGA
AVTELDQDVARLSLTGQSWSQSPASYFRSEMRGLPSTIHIPSSPPQFPSMEEMGVASNRA
KRYSSQRQRAAPEPPPPPPPMHLGVMEGHYYEPMSYQGPIYAHGEGPAPIPPQGMLVQPE
MHLPHPGLHPHQSGGPIANPALYGGPPVSLSPGQPQQLLPPPFYPPPGVMTFPYPTMYPT
PQAQAQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTVKPPPPELHFASE
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttctggttcggacagcgggaggtccgggtccccgacggcggccaagagccgcgtg
agggatcccgaaccgccggaggtgacgccggcccgggtcgagcccaaagtcgaggcggag
tctgagtgtgagagtgaagatggagtcggagaagctgtgctctctgactacgacagcgcc
gacccagaagagaatggatcgcattcagagggagccgaggaggaagaggaggccgagcag
tacagcgatgaagaggcgccggccggcgaggccaagccgctcgctgctgagggcccggct
gaggggggggaggcggagcagaagctggtggaagtagccgtagtggaggagggtgaagaa
gaaaaggagaaggatgaaggggaagaaaaggatgatgaagaggaggaggaggaggaagag
ggtgaagaaaaggaagaaggaggtaaagaggagaaaagagcagaggacaaagagaacctg
gctggcgagagacagagcggagacggacaggagtccaccgacgaccctgagacgaaggcg
ggggggaaacccggtcagaagctggatgatgacgaggaccggaagaacccggcgtacatc
ccgaggaagggtctgttctttgagcacgacgtgagaggccacgcccaggaggaggagagg
cccaaaggtagaaacaggaagctgtggaaggacgaggggcgctgggagcacgaccgcttc
agggaggaggagcaggcgcccaagagccgcggggagctcgtcgccatctacggctacgac
atccgcaacggggggggcacggcggagcggccgtaccgacagcgcaggccgagacagagt
ttgtctcccagcagagacaagcggtggagagacggaggaggggacggaccggttcggacc
tggcacagcggaggaggaggaggaggaggaggcctgaatcgaggcggagctccgcccatg
tctagccacgccccctctacccccctcgcctccctcccccagcgtagtagcaacccctcc
agaccgccgccatcccgcagcagaccgtcccaccccctcccgcctcagtataggaataat
gaatccaacgccccccagatgccccccagggaacgacagggccctaaagctccctacgac
ccctcgggagaccggggcctggtgatcagggggggccgcgggggggtgagaagctcctcc
gtggtcatcgaggacatagcggacggcgatcaggccgcgggcgccgtgaccccgtctcca
tcggctgggtaccagcctgcgttaccgcggcgacagcagcaggaacagagagggggcggc
gccgacagatctgtgtcgggattggccgacgcgcagccgaccactcgggaggcctctccc
cccgccgagcggcccccggagcgcaagtcctacgctctggctcgcaggactcgctctcga
cccgccgacctgggcagcaagcagccgtcggtggaggagtccgccgccaccccccccagc
ggggcgggggggaaaagctgggcgggagacgagccgggtcaggaagggaggggcggagcg
gcggtgacggagctggaccaggacgtagcgcgtctcagtctgacgggacaaagctggagt
cagagtcccgcctcctacttccgctctgagatgagaggcctccccagcaccatccacatc
cccagcagccccccccagttccccagcatggaggagatgggcgtcgcctccaaccgggcc
aaacgctactcgtcccaacgccagagagccgcaccggagccgccgcccccgccccccccc
atgcacctcggggtgatggaggggcactactatgagcccatgtcgtatcaaggaccaatc
tacgcccacggagaaggccctgcccctatcccgccgcaaggcatgctggtccagcctgag
atgcacctgccccaccctggtctccatccgcaccaatcagggggcccgattgctaacccc
gccctctatgggggcccgcccgtctccctgtcaccggggcaaccacaacagctgctgccg
ccaccgttctaccctccgccgggggtcatgaccttcccgtacccgacgatgtacccgacc
cctcaggctcaggcccaggtgacctacggaggggtcacctactacgacaccatgcagcag
caggctcagcccaaaccatcgcccccccgacgcacctcgcagcccgtcactgtcaagccc
cccccgccggagctgcactttgcttcagagtga
DBGET
integrated database retrieval system
