KEGG   Pungitius pungitius (ninespine stickleback): 119220919
Entry
119220919         CDS       T07626                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    119220919 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppug03019]
    119220919 (thoc6)
   03041 Spliceosome [BR:ppug03041]
    119220919 (thoc6)
Messenger RNA biogenesis [BR:ppug03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     119220919 (thoc6)
Spliceosome [BR:ppug03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    119220919 (thoc6)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 WD40 WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_EML_2 Beta-prop_EML EIF3I NBCH_WD40 Beta-prop_NOL10_N WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_IP5PC_F Beta-prop_WDR90_POC16_2nd WDR54 Beta-prop_WDR75_1st WD40_like WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 119220919
NCBI-ProteinID: XP_037333148
LinkDB
Position
12:complement(306641..310751)
AA seq 323 aa
MGPVELLHMSVFSQSFSPCGRFLAAGNNYGEIAVFSLSAALSPDATAQSQKPVLTFSAHE
GPVFSLLSNECHLLSAGNGEVSCWSWAELIKKNTKPLWTKRPNYKSSLEIPEINSMTFNS
RDNSLVLAGGDNNVHILDLESGLFKSVLQGHSDYVHCVSVRGREGEILSGGEDGAVRMWD
SRTGQCVHCIEVHKYESCARPQFGKWISCVTTDSDWMLCGGGPSLSLWHLRSLSPTSIFP
LIGCQRQTSFYQDMILAVGDGPSVSHCLLGGEVKAQIPCSPQSLNTMQLNTNSTDYRVLT
VGGSSDHIDVFTNLSYRTFSFTF
NT seq 972 nt   +upstreamnt  +downstreamnt
atgggccccgtggagctcctccacatgtccgtcttctcgcagagtttctctccctgtgga
cggtttctcgcagcaggaaacaactacggagagattgcagtgttcagcctgtctgccgct
ttaagtccagacgccacggcccagagtcagaaacccgtcctgaccttctcagctcatgaa
ggccccgtgttctcgctcctctccaacgagtgtcacctcctcagcgcggggaacggggag
gtgagctgctggagctgggccgagctcatcaagaagaacaccaaacctctgtggaccaag
agacccaactacaagtcaagcctcgaaatcccagagatcaactccatgaccttcaactcc
agagacaacagtctggttctggctggaggagacaacaacgttcacatcctggacctggag
agcggcctgttcaagtccgtcctgcagggccactcggactacgtccactgcgtgagcgtc
aggggccgcgagggcgagatcctgtcggggggggaggacggagccgtgcggatgtgggac
agcaggacgggtcagtgtgtccactgcatcgaggtccacaagtacgagagttgtgctcgg
cctcagtttggtaaatggatcagctgtgtgacaacggactctgattggatgctgtgtggt
gggggtccgtctctctctctgtggcatctccgctctctgtctcccacctccatcttccct
ctgattggctgccagagacagaccagcttctaccaggacatgatcctggccgtaggagac
ggcccatccgtctctcactgtctgcttggaggagaagtcaaagctcagattccgtgttct
cctcagagtctcaacaccatgcagctcaacaccaacagcaccgattacagagtgctgacg
gtgggaggaagcagcgatcacatcgacgtgttcaccaacctgtcctacaggaccttctcc
ttcaccttctaa

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