Pungitius pungitius (ninespine stickleback): 119221093
Help
Entry
119221093 CDS
T07626
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ppug01001
]
119221093 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ppug04054
]
119221093 (ciita)
Enzymes [BR:
ppug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119221093 (ciita)
Protein kinases [BR:
ppug01001
]
Serine/threonine kinases: Other
TAF1 family
119221093 (ciita)
Pattern recognition receptors [BR:
ppug04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119221093 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_8
AAA_16
LRR_14
nSTAND3
NLRC4_HD2
AAA_22
AAA
TsaE
NB-ARC
Motif
Other DBs
NCBI-GeneID:
119221093
NCBI-ProteinID:
XP_037333425
LinkDB
All DBs
Position
12:1959021..1970168
Genome browser
AA seq
1336 aa
AA seq
DB search
MEEETELAAACKALRSYAETFGCPQVDLRGLPFSADDGSTSGGGSGGGSGSGVQAGLGGT
WQADRTAGAAEDLLALMREVQSFPEGIAHLLSQTDRPGSPGAGHGVPPGFAELFSTTACS
AEDSQEDAGPEGGADTQWGAKMQDTDRDPFIWPDLGEIPDDLSEYLNDDYLKKFVVDTDV
LFNDPSLECEEELSTCSALPMHPEEAAADVLQQEPSDKTGNRRHRRRNRAPPADEDTPSR
PKRQRAAGRPKTVLEPAEPSVPPGSQPRSAEMAGLSAPPPRILHLHPSIQFIPILDAAAY
QGVPLRVSHPVINLPLPNTAATPTYILVPAASPPFRQQVPPLSPMDGAVAPVRMSSSPLG
SLSDTASKAVSPTRAPPPSPSDEMKESAVPLSPAVLDVPQVVKDYILEAKEHVRQSCKGM
ESHYVDVQVSQKEILHSGKNTNKVLEKELVIAGDTDRQKSLLGHIQMFKGSKGDKPKSFV
LLLGNAGMGKTTLIRKLCLDWSRNCLLEFDFVFSLDGKALSLPETSHSLQTLLLNFSSLA
PPCTDPEAVYAQILAAPKRVLVIFDGFDEVRDYEILLQTQEKDLITSLHKDSKAPAYTVR
QLYSAILQRVLLPGCTLLLATRPRGSASQLLRRTDSLLEVCGFNPANVETYLTQYFADRD
LGAAAVDTLKSCSYLQLLCWNPALCRLVCLVLEHRRGLGDLPRTLTGLCHRVLCLKLEGE
RRRALSEAEPQSGPSAEETQSQISGSSPGDRRRRNARSGAEVRTRSRTQSEKEEDGVNGE
KMKSVGGEVDRTERALLSQLSSLAWKGVKANSSILSTELAISAKLKAFGQRTGLFFSYRR
RTRPDVSSDGRDGGGGEDGEETGTQKNGKRRGKKGKAYDEDAGASEEHFLLWANPFLQSY
LAAIHLSLSRTVTDRAFLQTLPFHPRQKERRRPQREEVDLTQRFAVGLLFHDGAELQRLR
SSPETSVRDMVAAKQALVTRHLEGLSHGDLSPAQVLEACHHVYEASCTHGGGGGVGGGAR
LVAHLAANLPEVLTFHGVPLTPSDVFAVRNVLERGGREGRSFCLDLEDSGIQIPGLRALV
GLDNIITYRACIADVISLWEQLEQSGEEVLLRETVSKFKIHPLKATRACHVEHLAKLVHL
HARKRLSPSSSQSDSILSEGVPAVKELHKLEFELGPEKCAPVLLQLWELLPGLQNLQHLD
MENSKIGDGGAEKLADALVHLGSLEILNLSQNCIGNEGVKKLAITLGDLPKLHGLSLYSN
EISDEGAESLAAALPQAPSLTDLDLEYNKLTDVGAQSLGASLRNCKKMKTLRMWNQCIPY
GVFERLQQQDHRIHWQ
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaaacggagctggcggcggcctgcaaggcgctgcgttcgtacgctgagacc
tttggatgcccgcaggtggacttgagaggcctccccttctccgcagacgacggcagcacc
agcggcggtggcagcggcggtggcagcggcagcggcgtgcaggcaggtttgggcggcacc
tggcaggcggaccggacagccggcgcagcggaggacctgctggccctgatgagggaggtg
cagagcttcccagagggcattgctcatttgctctctcagaccgaccgcccggggtccccg
ggcgcgggtcacggcgtgccgccgggctttgcggaacttttttctaccacggcttgcagc
gctgaggactcccaggaggatgcggggccggaggggggggcggacactcaatggggtgca
aagatgcaggatacggatcgggacccgttcatctggcctgacctgggagaaataccagat
gatttatctgaatacctgaatgacgattacctcaagaagtttgtggtggacacggatgtg
ctcttcaacgacccatcgctggagtgcgaggaggaactcagcacctgcagtgcgcttccc
atgcacccagaggaggccgccgcggacgtcctgcagcaggagccgtcggacaaaacgggc
aaccgcagacacagaaggagaaatagagcccccccggccgatgaggacacaccgtcacgg
cccaaaagacagagagcggcaggtcgaccgaaaaccgtcctggaaccggctgagccatcg
gtgcctccagggtcacagccgaggtcggcggagatggcgggcctctccgcccccccaccg
aggatcctccacctccatccctccatccagttcatccccatcctagacgctgcagcatat
cagggcgtccctctgagagtctctcatccggttatcaaccttccgctgcccaacacagct
gcaacacccacttacatactggttcctgctgcctcgccacccttccgacagcaagtgccc
cccctctccccgatggacggagcggtggcgccggtccgaatgagttcatcccccctgggg
tctctgtcggacacggcgagcaaagctgtctctccgactcgtgccccgcccccctccccc
agcgacgagatgaaggagtccgctgttccgctgtctcctgcggtcctcgatgttccacag
gttgtgaaagactacattctggaagccaaagagcacgtccgtcagagctgcaagggtatg
gagtctcattacgtggatgtgcaggtgagccagaaagagattctccactcggggaagaac
actaacaaagttctggagaaggagctcgttattgcgggagatacagatcgacaaaaaagc
cttttggggcacattcagatgtttaaaggctcaaagggagacaaacccaaaagcttcgtg
ctgctactcggcaacgccggcatgggaaaaaccaccctgatcagaaaactgtgcctcgac
tggtccaggaactgcttgctagagtttgactttgtcttctctttagacggcaaagcactc
tctttaccggagacctcgcatagccttcagactctcctgttgaacttctcctctttggcc
cctccttgcacggaccctgaggcagtgtacgctcaaatcctcgcggcccccaagcgcgtg
ctcgtcatattcgacgggttcgacgaggtgcgggactatgaaatcctcctccagactcaa
gaaaaagacttgataacgtcattgcacaaagacagcaaagcgccggcctacacggtgaga
cagttgtactcggccatccttcagagggtccttctccctggctgcacgctgttgctcgcc
acgcggccgcgaggcagcgccagccagctgctgaggcggaccgacagtcttttggaggtg
tgcggctttaaccccgccaacgtagaaacatatttaacccagtacttcgctgacagggac
ctcggggcagccgctgtggacaccttgaaaagctgcagctatctacaactcctttgttgg
aaccctgctctgtgccggttggtctgcttggtgttggagcaccgcagaggtttgggtgac
ttaccgagaactttaaccgggctctgccatcgagtgctctgcctgaagctggaaggggag
agaaggagggcgctctcagaggccgagcctcaatctgggccatcggcagaagaaacgcaa
tcacaaatctcagggagttctccaggcgacaggcgccgaagaaacgcccggtccggagcg
gaagttcgcacgcgctctcgcacccaaagcgagaaagaggaagacggcgtcaacggggag
aaaatgaagagcgttggcggcgaggtggacagaaccgagagagcgttgctgtcccagctg
agttctctggcctggaagggtgtcaaagcgaactcgtccattctctccactgaacttgcc
atatctgccaaactcaaggcgttcggccaaaggacagggctcttcttctcttaccgccgg
aggacgaggccagatgtctcgagtgatggtcgagacgggggaggaggagaggacggagaa
gaaacgggaacacaaaagaatggaaaaaggaggggaaagaaggggaaggcgtatgatgaa
gacgctggtgcaagcgaggagcacttcctgctgtgggccaaccctttcctgcagagctac
ctggcagcaattcatctgtctctgtcaaggaccgtgacggaccgggccttcctccagacg
ctccctttccacccgcgccagaaggagcgtcggcggcctcagagggaggaggtcgatctc
acccagcgattcgcagtcgggctcctgttccacgacggggccgagctgcagaggctccgc
tcgtccccggagacttccgtcagagacatggtggccgccaagcaggcgttggtgacaagg
caccttgaggggctttcccacggggacctgagccccgcccaagtcctggaggcttgtcac
catgtttacgaggccagttgcacgcacggcggcggcggcggagtggggggcggcgcgcgc
ctagtcgctcacctggccgccaaccttccagaagtcctgacgttccacggagttccgctc
acgccgtcggacgtgtttgccgtgaggaacgttctcgaaaggggtggaagagaaggaagg
agtttctgtttggatttggaggattcagggattcagatcccgggcctcagagctctagtc
ggcctagacaacatcattacgtacagggcgtgcatcgctgatgtcatctccttgtgggag
cagctggagcagagtggcgaagaagtcctcttacgagagactgtgtccaaattcaagatc
caccctctgaaagccacgcgcgcctgtcacgtggaacacctggccaagctggtgcactta
cacgcgcgcaagaggctgtcgcccagttccagccaatcggattccatcctgtccgaggga
gtgccagctgtcaaagagcttcacaagctggagtttgagctcgggccggagaaatgtgcc
ccggttcttttgcagctttgggagctcctgcctggtctacagaatctccaacacttggat
atggagaacagtaagattggggacggaggagcagagaaactggccgatgctttggttcac
cttggatctctggagatacttaatctctcgcagaactgcatcggcaacgagggtgttaag
aaactagcaatcacactgggggatctacccaaactgcacggcttgagtctctacagtaac
gagatttccgatgaaggggccgagagcttagcggctgccctcccacaggcgccgtcgctc
acggacctggacttggagtacaacaagctgacagacgtcggagcacagagtttgggagca
agtctgagaaactgtaaaaagatgaagactctgaggatgtggaaccagtgtattccatat
ggagtctttgagagacttcagcagcaggaccaccggatccattggcagtag
DBGET
integrated database retrieval system
