KEGG   Pungitius pungitius (ninespine stickleback): 119221126
Entry
119221126         CDS       T07626                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X4
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug00670  One carbon pool by folate
ppug03015  mRNA surveillance pathway
ppug04981  Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    119221126
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    119221126
 09150 Organismal Systems
  09154 Digestive system
   04981 Folate transport and metabolism
    119221126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppug03021]
    119221126
   03019 Messenger RNA biogenesis [BR:ppug03019]
    119221126
Transcription machinery [BR:ppug03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     119221126
Messenger RNA biogenesis [BR:ppug03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     119221126
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_3 zf-CCCH_2 zf-CCHC zf-CCCH_12 zf-CCCH_4 zf-CCCH_RBM22 zf-CCCH_DUS3L zf-CCHC_3 Nab2-like_zf-CCCH_ zf-C3H1
Other DBs
NCBI-GeneID: 119221126
NCBI-ProteinID: XP_037333089
LinkDB
Position
12:complement(12324933..12335235)
AA seq 266 aa
MQDMLANVDHLKFDLELAMQQQLGAQPLPFPGMDKSGSAVCEFFMRAACQKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICMNYLVGFCPEGKSCKFMHPRFELPMGASEQPP
LQQQMQNQTKPVPTMGRSSLSLIQLTNSSPGLRPQNHMPMSHSHQNNMPGNRGPRPLDQV
TCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq 801 nt   +upstreamnt  +downstreamnt
atgcaggacatgctagctaacgtggatcacctcaagtttgacttggagctggctatgcag
cagcagctcggtgcacagcctctgcccttccccggcatggacaaatccgggtcggctgtc
tgcgagttcttcatgagagcagcatgtcagaaaggtgggatgtgtccgttccgtcacatc
agcggagagaagacggtggtgtgtaagcattggctcagagggctgtgtaagaagggagac
cagtgcgagttcctccatgaatacgacatgaccaagatgcctgaatgctacttctactcc
aagtttggtgagtgcagcaacaaggaatgtccatttctgcacattgatccagagtccaag
atcaaagactgtccctggtatgaccggggcttctgcaaacacggtcctgactgcagacac
agacacacacgaagggtgatctgtatgaattacctggtgggcttctgtcctgagggaaaa
tcctgtaaatttatgcacccacgctttgaattgcctatgggagcttctgaacagcctcct
ttacaacagcaaatgcagaaccagacaaagcctgttcctactatgggtcgctcgtcgctc
tctctcatccagctgaccaactccagtccaggcctgcggccacagaaccacatgcctatg
tctcattctcaccagaacaacatgcccggcaacagagggcctcggccactggaccaggtc
acctgctacaagtgtggtgagaaaggccactatgccaacaaatgcactaaaggccatctt
gccttcttgagcggacaataa

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