Pungitius pungitius (ninespine stickleback): 119221887
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Entry
119221887 CDS
T07626
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04110
Cell cycle
ppug04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119221887 (smc1a)
04114 Oocyte meiosis
119221887 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119221887 (smc1a)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
119221887 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
119221887 (smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
SlyX
Motif
Other DBs
NCBI-GeneID:
119221887
NCBI-ProteinID:
XP_037333945
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All DBs
Position
1:29699921..29828499
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AA seq
1231 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVCMVYQEDSGEERSFTRAIIGSSSEYRINNKVVGLPEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGDLAQEYERRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARASVQLQLFKLYHNETEIEKLNK
ELGQRNKEIDKDRKRMDHVEEELKDKKKELGRLMREQQTIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAARKSLQNAQKMYKKRKGDMDELDKEMKAVELSKQDFEERMEEEAQS
QGQDLTLEENQVKAYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYITTSRQSLDEQKRMEEELTEEVEMAKRRIDEINTELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCENVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSREMEITDLRDRMNLVEDEVFIEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQVDYEKNQLKEDQEKVMMWEQ
TVKKDEAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHDMEEIRKKLGG
ANKELTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIRLPLRSGTMDDISQGEGSSQTE
ESSSQRTSSTVLAKEALIEIDYSNLSEDLKDALSEEEIKGETNTLQQRLNEQQSILQRIS
APNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNNCFESVATNI
DEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALL
FAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVLNFQAIVISLKEEFYTKADSLI
GVYPEQGDCVISKVLTFDLSQYPDANPNPNE
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgggttatttaaaactgattgagatcgagaatttcaagtcgtacaaaggaagacagatc
attgggccttttcacaagtttactgcaatcatcggacccaatggatctggaaagtccaac
cttatggatgccatcagcttcgtgttggcagagaagactagcaacctgcgtgtgaagaca
ctcaaggatcttatccacggagcacctgtcggaaagccagctgccaacagagcttttgtc
tgcatggtgtaccaggaagatagcggagaggaacgctccttcacaagggccatcatcggt
tcctcctctgaataccgtatcaacaacaaggtggtcggcctgcctgaatacagtgaagag
ctggaaaaacttggcattctcatcaaggctaggaacttcttggtctttcagggagctgtg
gagtccattgccatgaagaaccctaaggagcgtacagctctgtttgaggaaatctcacga
tctggagatctggcacaggagtacgaacgcaggaagaaggaaatggtgaaagcagaagaa
gacacgcagttcaattaccatcgaaagaaaaacattgctgctgagcgcaaagaagccaag
caagagaaagaggaggctgagcgttaccagcgtctaaaagatgaagttgccagggcaagt
gttcaattgcaacttttcaagttgtaccacaatgagactgagattgagaagctaaacaaa
gagctgggccagagaaacaaggagatcgataaagaccgaaaaaggatggaccatgtggag
gaggagctgaaggacaagaagaaggagctgggaagactgatgagggagcagcagaccatt
gaaaaggaaatcaaggagaaagactctgagttgaatcaaaagaggccgcagtacatcaag
gccaaagagaacacgtctcacaagatcaagaagctcgaggcagctcgcaaatcattgcaa
aatgcccagaagatgtacaagaaacgcaagggggacatggatgagctggataaagaaatg
aaggcagtggagctgtccaagcaagactttgaggagcggatggaggaggaggcacagagc
cagggccaggacctcacccttgaagaaaaccaggtcaaggcgtaccatcggctgaaggag
gaggccagtaaacgggctgccaccctggctcaggagctggaaaagttcaaccgcgaccag
aaggccgaccaggaccgcctcgacttggaggagaggaagaaagtggagacggaggccaaa
atcaaacagaaaatacgtgaaattgaggaaaaccagaaacgtattgagaaactagaagat
tacattaccaccagcaggcagtcactggatgagcagaagcgcatggaggaggagctgacg
gaggaggtggagatggcaaagaggaggattgatgagatcaacacggagcttaaccaggta
atggagcagctgggagacgccagaatcgaccggcaggagaacagtcgccagcagcgcaag
gctgagatcatggagagtattaagagactctaccccggctctgtgtatggtcgtctgatc
gacctgtgccagcccactcagaaaaagtatcagattgccgtgaccaaagtgttgggcaag
aacatggacgccatcattgttgactcggagaagactggcagagattgtattcaatacatc
aaggagcagagaggcgagcccgaaaccttccttcctcttgactacctcgaggtaaaacca
acagatgagaaactaagggaactgagaggagccaaactggtgattgatgtgattcgctat
gagcctccccacatcaagaaagccctccagtatgcttgtggcaacgccctggtctgtgag
aacgtagaggatgcacgaaggatcgccttcggagggccatacagacacaagactgtagcc
ctcgatggtaccttgttccagaagtctggagtcatctctggaggagccagcgacctgaag
gccaaggccaggcgctgggatgagaaggcagtggacaagctcaaggagaagaaggagaaa
ctcactgaagagctcaaagaacaaatgaaggccaagaggaaggaggccgagctgcgtcag
gtgcagtctcaggcccatggtttgcagatgagactcaagtactcccagagtgatctggaa
cagacgaaaacccgccacctctccctcaacatgcaggagaagtccaagctcgagagcgag
ttggcaaactttggtcctcgcatcaacgacatcaagaggatcatccagtcccgcgagatg
gagatcactgacctgcgagaccgcatgaacttggtggaagacgaggtgtttatcgagttc
tgtaaagagattggagtgaggaacatcagagagtttgaagaggagaaggtgaagaggcag
aatgagattgcaaagaagcgccttgagtttgagacccagaagacccgcctcggaatccag
gtagactatgagaagaatcagctgaaggaggaccaagagaaagttatgatgtgggagcag
accgtcaagaaggacgaggccgaaatagaacgactgaagaaagaggagcacaggcacatg
aagatcattgatgagacaatggcacagctgcaggacctcaagaaccagcacctcaccaag
aaatctgaagtcaatgataagaaccacgacatggaggagatccgcaaaaaactgggtggc
gccaataaggagttgactcatctccagaaggaagtgacggccatcgagaccaaactggag
cagaagcgcagtgaccgtcacaacttgctccaagcctgcaaaatgcaggacatcaggttg
cctcttcgttctggaacaatggatgatatcagccaaggagaggggagctcccagacagag
gagtccagcagccagaggacgtccagcacggttctggctaaagaggcactcatagagatc
gactacagcaacctgtctgaagaccttaaggacgctctgtcagaggaggagatcaagggg
gagacgaacacactgcagcagcgtctgaacgagcagcaaagcattcttcagaggatcagt
gcacccaacatgaaggccatggagaagctggaaagtgtcagggacaagttccaagagacc
agtgacgagtttgaggctgcccgtaagagagccaagaaggccaagcaagcctttgagcag
atcaagaaggaacggtttgatcgcttcaataactgctttgagtctgtggccactaacatc
gatgagatctacaaggccctctcacgcaacagcagtgcccaggcttttttaggcccagaa
aacccagaggagccgtacctggatggcatcaactataactgtgtggctccaggaaagagg
ttcagacccatggacaacctgtctggaggagagaagactgttgctgccctggctcttctg
tttgctattcacagctacaaacctgctcccttctttgtcctggatgagattgatgctgca
ttggacaacactaacatcggcaaggtggccaactacatcaaagaccagtcggtgctgaac
tttcaggccatcgtgatttctctgaaagaggaattctacacgaaggcagactcgcttatc
ggtgtttatccagagcaaggagattgtgtcatcagtaaagtgcttacctttgacctctcc
cagtaccccgatgccaacccaaaccccaatgaataa
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