Pungitius pungitius (ninespine stickleback): 119221912
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Entry
119221912 CDS
T07626
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119221912 (clstn1)
Cell adhesion molecules [BR:
ppug04515
]
Cadherins
Cadherin related
119221912 (clstn1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
CDC45
Laminin_G_3
FAM176
Laminin_G_2
V_ATPase_I
EphA2_TM
DUF7502
Cadherin_C_2
TMEM132_C
PFF1_TM
SMP_2
Motif
Other DBs
NCBI-GeneID:
119221912
NCBI-ProteinID:
XP_037334009
LinkDB
All DBs
Position
1:complement(28219139..28249180)
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AA seq
982 aa
AA seq
DB search
MRFRGNAHFASAVGAVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTLTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICNYEIVTPDVPFTIDKDGFIKNTEKLSYGKERMYKLTVTAYDCG
KNRASEDVLVKISIKPTCKPSWQGFNKRIEYEPGTGSLALFPSMHLETCDEPITSIRADI
ELETNHIGKGCDRDTYSEKSLHKLCGASSGTVELLPPPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPEGLVSTSLKEPFTLSVWMRHGPGAHEKETILCNSDKTEMNRHHYSLYVH
NCKLILLLRQDPSEAENYKPAEFHWKLDQACDKEWHHYVLNVELPAVSLFVDGTTFEPFL
VTEDYPLHSSKIESQLTIGACWQDNSGHDNDTESVSEPTSGGNARMAQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVEFNPNQSSMTVEGDDIDAFDKVMQHI
SYLNSRQFPTPGIRHLRISTTVKCFNGESCVTVPDAEGYVMVLQPEEPKISLSGIDHFAR
SAAEFESQEGVTLFPELRIVSTITREVEADTESEAAEGADDDPTVQETVVSEEIMHNLDT
CEVTVAGDELDGEHEGLELDMSQLQQHGLEMSSSNLGLIVTGVNTMANYEQVLHLIRYKN
WHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPVEHANNAMVQPNFINPVHHAS
VDLSGHNLVNAHQASVVPSAATVVIVVCVSFLVFMIILGVFRIRAAHQRTMTDQESGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEESEDGEEEDDITSAESESSEEEEGAE
PEDQQAASRQQQLEWDDSTLTY
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgcggttccgagggaacgcacactttgcatccgccgtcggagcggtcctcggactatta
tgtgcggtggaggcagccaaagtcaataagcacaaaccatggatcgagacgacgtaccac
gggatcgtgacggaaaacgatgacaaagtgcttctggaccctcctctgattgctctggac
aaggatgctcctctacgctacgcagagagttttgaggtgacccttaccaaagaaggggag
atttgcggcttcaggatccacgggcagaatgtccccttcgaggcagtggtcctggacaag
tccaccggcgagggggtcatccgagccaaggacaagctggactgcgagctgcagaaagag
cacaccttcaccatccaagcctacgactgcggagagggtcctgatggcgccaacatgaag
aaatcccacaaggccacggtccacatccaggttaacgacatcaatgagtactcacccgtg
ttcaaggagaagtcctacaaagccaccgttatcgaggggaagaagtatgacagcatcctg
aaggtggaggcagtggacgctgactgctccttccagttcagccaaatctgcaactacgag
atcgtcactcccgatgtgcccttcaccattgacaaagatggcttcatcaagaacacagag
aagctgagctacggcaaggagcgcatgtacaagctgactgtgacggcctacgactgtgga
aagaaccgggcctccgaggacgttctggtcaagataagcatcaagcccacctgcaaaccc
agctggcaaggttttaataagaggattgaatacgagccgggcacaggtagcctggctctt
ttccccagcatgcacttggagacgtgcgacgagccaatcacgtccatccgagccgacatt
gagctggaaaccaaccacatcggcaagggctgcgaccgcgatacctactctgagaaatct
ctgcacaagctgtgcggagccagctccggcaccgtggagcttctgcctccgcccagcagc
tccgcgaactggacggtaggtctgcccaccgacaacgggcacgacagcgaccaggtgttt
gagttcaatggcacccaggccatcaaggtccccgagggcctggtgagcaccagcctgaag
gagcccttcaccctctccgtgtggatgaggcacggccccggggcccacgagaaggagacc
atcctctgcaactccgacaagacagagatgaacagacaccactactcgctttacgtccac
aactgcaagctgatcctcctcctgcgccaagatccatccgaggcagagaactacaaacca
gccgagtttcactggaaactcgaccaggcgtgcgacaaagagtggcatcactacgtgctg
aatgtggagctccccgctgtgtctctgtttgtggatggcactacgttcgagcccttcctg
gtcacagaggactacccgctgcactcctccaagattgaatcgcagctcaccattggtgcc
tgctggcaagacaactcaggacatgacaatgacactgagtcagtctctgagcccacctca
ggtggaaatgctcggatggctcagtttttccgcgggaacctagcgggcctgatgatccgc
tctggcaagctggagaacaagaaggtgattgactgtttgtacacctgcaaggaaggactg
gacgtgcagctgcccgaggaggtggcttcagctgtcaaggttgagttcaatcccaaccaa
tcctccatgactgtggagggcgacgacattgatgcattcgacaaggtcatgcaacacatc
tcctacttgaactcccgccagttcccgacccctggcatcaggcacctccgcatctccacc
accgtcaaatgcttcaacggggagtcctgcgtcacagtgccagatgccgaaggttatgtg
atggtgctgcagccagaagagcccaagatcagcctgagtggcatcgaccactttgcccgc
agcgctgccgaattcgagagccaggaaggcgtgacgctgttccctgaactacgcattgtg
agcaccatcacccgcgaggtggaggccgacacggagtctgaagcggcagagggagctgat
gacgaccccacggtccaagagacggtggtgtcagaagagatcatgcacaacctggacaca
tgtgaggtgactgtggcgggagacgagctagatggggagcacgagggcctggagctggac
atgtcccagctgcagcagcatggcttagaaatgagctcctctaaccttggcctcatcgtc
accggtgtgaacaccatggccaactacgagcaggtcctgcatcttattcgttacaagaac
tggcacaccgaggctctctttgacaggaaattcaagctggtctgctccgagctcaacggt
cgctacatcagcaatgacttcaaggtcgaggtgaatgtcatccacacagccaatcccgtg
gagcatgccaacaatgccatggtgcagccaaacttcattaaccctgtgcatcacgcctct
gtggatctgtccggtcacaacctggtcaacgctcaccaggcctcagtggtacccagcgcc
gccaccgtcgtcattgtggtgtgcgtcagcttcctggtgttcatgatcatcctgggcgtg
ttccgcatccgagccgcacaccagcgtaccatgactgaccaggagagcggcaaggagaac
gagatggactgggacgactcggccctcaccatcaccgtcaaccccatggagacgtacgag
gaccagcacagcagcgaggaggaggaggaggaagaggaggaggagagcgaggatggagag
gaggaagatgacatcacgagcgctgagtcagagagcagcgaagaagaggagggcgcggag
ccggaggaccagcaggcggccagcagacagcagcagctggagtgggacgactccaccctc
acttactaa
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