Pungitius pungitius (ninespine stickleback): 119221967
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Entry
119221967 CDS
T07626
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119221967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119221967
03036 Chromosome and associated proteins [BR:
ppug03036
]
119221967
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119221967
Coactivators
SAGA/TFTC/STAGA complex
119221967
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
119221967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Cupin_8
AAA_23
Motif
Other DBs
NCBI-GeneID:
119221967
NCBI-ProteinID:
XP_037334136
LinkDB
All DBs
Position
1:complement(16639676..16647241)
Genome browser
AA seq
886 aa
AA seq
DB search
MRLTGERSGAKMAAPSDLLDDVFFNTKVDEKVVNDVVGSLESELTRERRVNAEASVQVTS
NHAGNSAVGRNSDVEGSKMGLSQQERAKSGAGVQGGVISSAGSRGPSADAAAETTSSVTA
AHSPSKPGTLNGSAVVMTCHITGNNNNNNHSSSSSQPAATLVSNGPVSVSKGSATVPSAI
IKTSPATVPTVTLARPPLQTDDAALTSPAVGVNKLEPAKGAMQSAARSPSVLQSPRTPVA
PPGGIRAIAPQVFAPRLAQPQQGAPNIQNIQLPPGMVLVRSESGQLLVIHQQTLAQMQAQ
SQSQSAMTPRPAAPTSTPPVQIASLQAPGASPLARPVAPTTIIKQGSAVQATATPTTTLQ
RPPVLQNTIVLGGTAPGQPLATPTPVQPAPASAQRATGTPVTPTAVTAETLENVKKCRNF
LSTLIKLASSGKQSSETTANVKELVKNLLEAKIEPEDFTSRLYRELSSSPQPYLVPFLKR
SLPALRQMTPDPESFIQQSLLPLPGPHPAAATSAALTAVMLRPAPPTASTGPTATKTTVV
SLTQTPTSKPALMVAQQHGTLVRPQVTLARSPMATLRGQPHSRIIVSHPQVVKQQPTAMK
QTLALGAKGVQVVSQSSLIAAQRNKLKEAAGGTFREDDDINDVASMAGVNLSEESDRILA
TNSELVGAVTRSCKDEAFLSTPLLARRALEIGRKFGVGELGTDAANFISHATQQRLRHLL
ERVSLAAQQRNAAFKEDEQCEQVNDARAQLRFFEQLDQMEKQRKEDQEREILLKAAKSRS
RQEDPEQLRLKQKAKEMQQQELAQIRQREANLTALAAIGPRKKRKMESPVRGAGAEGSGP
GPCQPGGSRQFGRQRITRVNLRDLLFCLENERGTRRSHLLYKGFLK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctcacgggcgagcgcagcggggcaaagatggcggcgccctccgatttgctggat
gatgtgttcttcaacacgaaggtggacgaaaaagtagttaatgatgttgtcggatctctg
gagtccgagctgactcgagagaggcgagtcaacgcagaggccagcgttcaggtgacgtca
aatcacgccggaaattccgctgtaggtcgcaattccgatgttgagggaagcaaaatggga
ctttcacaacaagagcgcgctaaatcaggggcaggagtgcaaggaggtgtcattagcagc
gcggggtcccgcggtccgagcgcggacgccgcggccgagaccacgtcgagcgtgacagcc
gctcacagcccgtccaagccggggactttgaatggaagtgccgttgtgatgacctgtcac
atcaccggcaacaacaacaacaacaaccactcctcctcctcctcccagccggccgccacc
ctcgtcagcaacggacctgtatctgtgagcaaaggaagcgcaacggtgccgagtgccatt
attaaaacttccccggcgaccgtgcccaccgtcacgctggcgaggccccctttgcaaact
gacgacgcggcgctgacgtcaccggcggtcggcgtcaacaagttggagccggcgaaaggc
gcgatgcagagcgccgcgaggagcccgtccgtgctgcagagcccgaggacgccggtagct
ccccccggcggaatacgagccatcgccccgcaggtgttcgctcctcgactcgcgcagcct
cagcagggcgccccgaacatccagaacatccagctccctccaggcatggtcttggtgcgg
agtgagagcgggcagcttctggtgattcaccagcagaccctggctcagatgcaggcacag
tcgcagtcccaaagcgccatgacaccccgaccggcagcccccaccagcactccacctgtc
cagatcgcgtctctgcaggctccgggggcgtcaccgctggctcgtcccgtcgcccccacc
accatcatcaaacaagggtccgctgtccaggccaccgcgacgcccaccaccaccttgcag
aggccccctgtgctgcagaacaccatcgtgctgggagggacggcccccgggcagccgctg
gcaacgcccaccccggtgcagccggctcctgcgtccgcacagagggccacggggacccct
gtcactccaacagctgtcacagctgagacgctggagaatgtgaaaaaatgccggaacttt
ctgtccacgttgatcaagctggcgtccagcggaaagcagtcctccgagaccacggccaac
gtcaaggagctcgtcaagaatctgctggaagcgaagatcgagccagaagattttaccagt
aggttgtaccgtgagctcagctcctcgccgcagccgtaccttgtgcctttcctgaagagg
agtctcccagcgctgcgtcagatgaccccggaccccgagtccttcatccagcagagcctg
ctgcctctgcccggccctcatcccgctgcagccacctccgcggccctcaccgccgtgatg
ctgcgacctgccccccccacggcctccaccggccccaccgcaaccaagaccaccgtcgtc
agcctcacgcagacacctaccagcaaacccgcactgatggttgcccagcaacacgggacg
ctagtgaggccacaggtgacgctggctcggtctcccatggcaaccctcagaggacaacct
cacagccgcatcattgtgagccacccgcaggtggtcaagcagcagccgacagcaatgaag
caaacgttggctctgggggcaaaaggggtgcaagtggtcagtcagtcctccctcattgct
gcgcagaggaacaagctgaaggaagcagcaggaggaaccttcagggaagatgacgacatc
aatgatgtggcctccatggccggggtcaacctgtcagaggagagcgatcgtatcttggcg
accaactctgagctcgtcggcgcggtgactcgctcctgtaaagacgaggccttcctctcc
acgcctctcctcgcccggagagctctggagatcgggaggaagtttggtgttggcgagctg
ggcaccgacgccgccaacttcatctcccacgccacgcagcagcggctacgccacctgctg
gaaagggtgtctctagcggcgcagcagaggaacgccgccttcaaggaggacgagcagtgc
gagcaggtcaacgacgcgcgggcccagctgaggttcttcgaacagctggatcagatggag
aagcaaaggaaggaggatcaggagagagagatcctcttgaaggccgccaagtcccggtca
cggcaagaagaccccgagcagctccgtctgaaacagaaggccaaagagatgcagcagcag
gagctcgctcagatccggcagagggaggccaacctaacggcgctggcggccatcggcccg
aggaagaagcgcaaaatggagtccccggtccggggcgctggcgccgagggctcggggccg
ggcccctgtcagccggggggctccagacagttcgggcggcagcgcatcaccagggtgaac
ctccgggacctgctcttctgcctggagaacgagagaggaacccgccgctcacacctgctc
tacaagggcttcctcaaatag
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