Pungitius pungitius (ninespine stickleback): 119222362
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Entry
119222362 CDS
T07626
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
DUF4992
SPOR
Motif
Other DBs
NCBI-GeneID:
119222362
NCBI-ProteinID:
XP_037334839
LinkDB
All DBs
Position
1:22366408..22394051
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AA seq
1588 aa
AA seq
DB search
MSTQLLASLSLSFWLMLCLLLGVFLLLSTGVHGQGRLKLTVLSEDRLQMKWKEADGPVQG
YKVRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTEKLLAKRRFTMEG
LREEETIRSSSREQKKKTLPGGSGSGDLDDATEALTGLPTVLYPDPTTTISTSTTAAPTE
SPVPETPSQPPDEAQEKATKEKRKRKKEKERDRSKGEDKEEQGTTQGKAAEEKTRKAPFP
TQPVTGTSPRKPFECDSMAAADIVLLVDGSWSIGRTNFRRVRDFLEGLMTPFHIGPDHIQ
IGLTQYSGDPRTEWQLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEDNMRAEAGAR
SGAPFFLVLLTDGKSQDDAIAAANRLKSAGVEIIAVGVKNADEAELRQVASEPVDLNVYN
VNDFPLLSKLVGRLVHILCGRIEDRGISKRMEPGPTADPSLYHPGPTDLRFSELGSREVQ
LHWTNPAKPVRQHRVVYHGAEGQTPHEVVLAGSESTVLLQGLSSQTLYHVSIFPVYEDNV
GLALRGTVTTLPLAIPTDLEVTPSSFSTLRVSWGSAPGATQYMILYSALNHGEPDDAKEE
KFSAEQTGGVELAGLLPATDYSVTLYALYDEDPSDPVTAVATTLHVPPPASVQFPMVTHS
MLRVSWVPGAVDVPGHRITYSTNLGSDVKQVEVAGLNSVVLQNLSSLSRYLVSVQSHYPL
GLSAALTSNVTTLKVPSPSDFRVSNFSGSDITVRWESAADDVVSYLIKWISLSGGDLRQL
RAGGESEGAILEGVEDDKEYQISLSALYGDGAQSEAVATRYSTLSGGGPSRILVTEETAV
SLVVSWVPPNAHVLQYRVSYTALNAAETQDSTVLVPGAEKRVTLESLQPDTRYSILVTAE
YRNREGGSGSAQGKTASLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIVIYSVKDKQVKE
EVVDESSSSHCFTDLEPETLYRISVHSLLGFAEGAAVSILHPTATAPARIAIHPRMYPVH
NEVCPEVTIRNSFVKGFDMMEAFGLTKTAHSSVEGVAAEPFVFNALPVYTLYRDVQLTQS
TRFIHPAGFSPEHTISIAFRVLQETPREPFALWQLTDNDFQPKMGVVLDPTTKHLVYFSL
DYRGEVQELTFDQRQVHRLFYGSFHKVHLSISQVSVSLSVDCQRVGERPARPLGSLPTDG
FEMLGKLVKTRGPNSGSAPFQLQSFEIVCNTSWASEDTCCDLPGVRDEESCPVPAYTCTC
SSDIPGAPGSPGPVGKPGPRGEKGGKGEQGQKGEVGPAGKPGFEGGLGPLGSTGPRGMAV
QGKAGPPGARGEKGDPGRPGVQGLPGPPGSVGEVGIPGPQGIRGLEGNIGGPGLTGPRGF
QGRPGHPGPLGDRGFSGPAGPTGLPGGKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVL
KLDLFINEMSRKPAPIEEPVGPPGEPGIPGPRGPPGPRGTQGRVGLRGTTGRGGYPGEQG
RLGMPGAKGDAGPNVQGPIGVKGFAGPPGESKLGSLGSKGEDGKAGPPGTAGPPGQPGEG
GPPGVCDSSGGCQRVPPQTEDPYYGYQP
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgtctactcagctccttgcttcattatcattgtctttctggctgatgctgtgtttgctg
cttggtgtcttcctgctgctgtccacaggagtccatggacaaggtcgtcttaagctgacg
gtcctgtctgaggacagactgcagatgaaatggaaggaggctgatggacccgttcagggc
tacaaagtcagagtgagacccatctcagaggtgccccagcccgagctgatgctgaccacc
acacggggccgggccacggtggcgggactggactccagtcaggagtacgctctccaagtc
ctcgtgctcaatgggacgacagagaaactcctcgcaaagcggcgattcaccatggagggt
ctacgggaggaggaaacaatccgcagtagtagtcgagagcagaagaagaagacgttgcca
ggcgggtcggggtcaggagacctggacgatgcaacggaggctctgactgggttgccgaca
gttctttatccggaccccaccaccaccatcagcaccagcaccaccgcagcccctacagag
tccccagtcccagaaaccccctcccagccccccgacgaggcccaagagaaagccaccaaa
gagaagaggaagcgtaagaaggaaaaagagcgggatcgttcgaaaggggaggataaggag
gagcaggggacgacgcagggaaaagccgccgaggagaaaacgcggaaggcccccttcccc
acccagccagtgacaggtacgtctccaaggaaaccgtttgagtgtgacagcatggcagcg
gcggacatcgtgttgctggtggacggctcctggagcatcgggcgcaccaacttcagacgg
gtccgagacttcctggagggccttatgacgcccttccacatcgggccggaccacattcag
atcggtctgacccagtacagcggagacccccgcactgagtggcagctcaacaacttcaca
accaaagaccagctgttggaggcagtgaggaatttcagatataagggaggaaacactttt
acaggccaggcgctgctccatgtcatggaggacaacatgagggccgaggcgggcgccagg
tcaggcgcaccctttttcctggtcttgttgaccgatgggaaatctcaggatgacgccatt
gctgcggcgaaccggctgaagagcgccggcgtggagatcatcgctgtaggcgtaaagaat
gcagacgaggccgagttgagacaagtggcgtcggagccggtggatctgaatgtctacaat
gtcaacgacttccctctgcttagcaaactggtgggccgactggttcatatcctgtgtggc
aggatagaggaccgtggcatctcaaaacgaatggagcccgggcccacagctgacccgtcc
ctctaccaccccggtcccaccgatctccgcttctctgaactgggctccagagaagtccag
cttcactggaccaatcccgcaaagccagtccgacagcaccgagtggtctaccacggcgcc
gagggtcagactccacatgaggtggtattggccggctcagagtcaactgtgctgctgcaa
ggcctctcctctcagacgctgtaccacgtgtccatcttcccggtgtatgaagacaatgtt
ggcctggcactcagaggaactgtcaccacactgcccctcgccatccccaccgacctggag
gtgaccccttcctctttcagcacgctgagggtgagttggggctcagcgcccggtgcaacg
cagtacatgatcctgtactctgccctcaaccacggggagccggatgacgctaaggaggag
aagttcagtgcagaacagacaggaggggtggagctggcagggttactgccggcgaccgac
tactccgtcaccctctatgcgctgtatgatgaggatcccagcgaccccgtcactgctgta
gccaccacattacacgtcccaccgccagcgagcgttcagttcccgatggtcacccacagt
atgctgagggtgagctgggtgcccggagcggtggatgtccccggccacagaatcacctac
agcaccaacctcggcagcgacgtcaagcaggtggaggtagctggactgaactcggtggtg
ctgcagaacctctcgtcactctccagatatctggtatcagtccagtctcactaccctctg
ggcctgtcggcagccctcaccagtaacgtcaccacactgaaggtgccttccccatcagac
ttcagggtgtccaatttctcgggcagtgacatcaccgtgcgctgggagtctgcagccgat
gacgtcgtctcttacctcatcaagtggatctccctaagtggaggagacctgagacagctg
agggcgggaggcgagagcgaaggggcgatcctggagggggtggaggacgataaggaatac
cagatctctttgtctgcactctatggagatggagctcagagcgaagctgtggccacacgc
tacagcaccttgtctggcgggggcccatccagaatattggttaccgaggagacggccgtc
agcttggtggtcagctgggtacctccgaacgctcacgtgctccagtaccgcgtgtcctac
actgcgctaaatgcagccgagacccaggacagcaccgtcttggtcccgggtgctgagaag
cgggtgacgctggagtcgttacagccagacactcggtacagcatcctggtgaccgctgag
taccgcaacagagagggaggcagcggttctgctcagggtaaaaccgcaagtctgcgggtg
agcagcgtgagtgtggtcaggtcagaccactccagtatctgtgtttcttggaggcctgtg
tctgctgtcgatggatatcgtatcgtcatctattcagtcaaagacaagcaagtaaaggaa
gaagtggtggatgagtccagcagcagtcactgcttcactgatctggaaccagagactctg
tatcgcatcagcgtgcactctcttctgggctttgcagagggcgccgccgtctccattctc
catccaacagccacagctcccgctagaatcgccatccacccccgaatgtaccccgtccac
aacgaagtctgccctgaagtcaccatcagaaacagctttgttaaaggatttgacatgatg
gaagctttcggcctgaccaagacggctcactcgtccgtggagggcgtagcagccgagccc
ttcgtgttcaacgccctccccgtttacactctgtacagagacgtccagctgacacagagc
accaggttcatccaccctgcgggtttctcgcctgaacacaccatcagcatcgccttccgc
gtgctgcaggagactccacgggagcccttcgccctctggcagctcaccgacaacgacttc
cagcccaagatgggagtggtgctcgacccgaccaccaaacacctggtgtacttcagtcta
gactacaggggagaagtgcaggaactgacctttgatcagcggcaggtccaccggctgttc
tatggcagtttccacaaggtccacctgtcgatcagccaggtgagcgtgtccttgtcagtg
gactgccagcgtgtgggggagaggcctgcccgccctcttggcagcctgcccaccgacggc
tttgagatgctgggaaaactggtgaagaccagaggacccaatagtggatccgcaccgttc
cagctgcagtcctttgagatcgtttgcaacacgtcgtgggcttcagaagacacctgctgt
gacctgccaggggtgagagatgaggagagctgtcccgtcccggcctacacctgcacctgc
tcctccgacatccccggagcccccggctcccctggaccggtcggaaagccaggtcctcgt
ggcgagaaaggcggcaagggagagcaaggacaaaagggggaggtgggtcctgcgggaaag
cctggatttgagggaggtcttggacccctgggcagcacagggccccggggcatggccgtg
cagggtaaagcgggtccgcctggtgcaagaggggaaaaaggagatcccgggagaccaggg
gttcagggtttaccaggacctccgggttcagtaggagaggtggggattccaggccctcag
ggcattcgggggctcgaagggaacatcggtggaccaggcctcactggccccaggggtttc
cagggaaggcccggacacccggggcctttaggggacagaggcttctcagggcctgcgggg
cctacgggtttgcctggaggtaaaggggagcgaggagagaagggggaacctcagtccatg
gccatgatctaccaactggtcacacaggcctgtgagcaactggtgcataaggaggtgttg
aagctcgacttgttcattaacgagatgagtcgaaagcctgctcctattgaggagccggtg
gggccccccggggaacctggtattccggggcccaggggcccgccgggccccagaggcacc
caggggcgtgtcggcctgagggggaccaccggcaggggaggatatcctggagaacaggga
agattaggtatgcccggggcgaaaggggacgcagggcccaatgtccaggggcccataggg
gtcaaaggatttgcaggtcctcctggggagtccaagctcgggagcttaggttccaaagga
gaagatggtaaagcaggccccccagggaccgccgggccccctggacagccgggcgagggc
ggaccaccgggtgtgtgcgacagcagcggaggctgccaacgggttcccccacaaacagaa
gacccgtattacggctaccagccctga
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