Pungitius pungitius (ninespine stickleback): 119222799
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Entry
119222799 CDS
T07626
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119222799 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119222799 (prpf6)
Spliceosome [BR:
ppug03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119222799 (prpf6)
Complex C
U5 SnRNP specific factors
119222799 (prpf6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP6_TPR
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_2
TPR_17
TPR_8
FAT
TPR_1
TPR_9
ARM_TT21_C
ARM_TT21_5th
Dehydratase_MU
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
119222799
NCBI-ProteinID:
XP_037335577
LinkDB
All DBs
Position
1:complement(14649710..14659456)
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AA seq
964 aa
AA seq
DB search
MASTGIKQGPKLVSKSSAGGAGAAGAGGGPPIIPIASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQEDEEEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLSEVSEEEWLSIPEVGDARNKRQRNPRHEKLTPVPDSFFSKHLQTGENHTSVDPL
QGLGGLSTPYPGSMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDL
NSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTE
MCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDMRAKKRVLRKAL
ENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKAR
ENIPTDRHIWITAAKLEEANLNTQMVDKIIDRAITSLRANGVEINREQWIQDAEECDKAG
SVATCQAVIRAVIGIGIEEEDCKHTWMEDSDSCVSHGALECARAIYAHALQVFPSKKSVW
LRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALAFQA
NPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAQEL
CTEALKHYEDFPKLWMMRGQIEEQCESMDKAREAYNQGLKKCPHSSGLWLLLSRLEERVG
QLTRARAILEKARLKNPQSPDLWLESVRLEFRAGLKNISNTLMAKALQECPNSGILWAEA
VFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDA
WALFYKFEQQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAGVAGKI
KNTF
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggccagcacggggataaaacaaggacctaaactggtctccaagtcgtccgcaggaggc
gccggggcggcgggggccggcggcgggcccccgataatccccatcgcctctccgctgatg
gggaagaagaagaagccgtttctggggatgccagctccgctgggctacgtccccggtctg
ggcagaggtgccactggtttcaccacccggtctgatatcggtcctgctcgtgatgccaat
gatccagtggacgaccgacatgctccgccagggaagaggacggttggggaccaaatgaaa
aagaaccaggaggacgaagaagaagatctgaatgacacaaattatgatgagtttaatggt
tatgcaggtagcttgttctccagtgggccctacgagaaagatgatgaagaagcagatgct
atatacgcagcactggacaagaggatggatgaaaggcgcaaagaaagaagggagctgaga
gaaaaggaggaaatcgagaaataccgtatggagcgacccaaaatccagcaacagttttct
gatctaaagagaaagttatcagaggtgtcggaggaggagtggctaagcatccctgaggtg
ggagatgccaggaataagcgccagagaaatccccgccatgagaaactcacccccgtcccc
gacagcttcttctccaaacacctgcagaccggagagaaccacaccagcgtcgaccctctg
caagggctgggaggtcttagcacgccgtacccggggagcatgacgccggggaccggagag
ctggacatgaggaagatcggtcaggccaggaacacactcatggatatgaggctcagccag
gtgtctgactcagtgagcggacagactgtggtggaccctaaaggttacttgacggatctc
aactccatgatccccacgcatggtggggacatcagtgacatcaagaaggctcgtctgctg
ctgaaatctgtgcgggaaaccaaccctcaccacccgccggcctggatcgcctccgccagg
ctggaggaggtgaccggcaaactccaggtggccaggaacctgatcatgaaaggcactgag
atgtgtcctaagagtgaggacgtgtggctggaagcggcccggcttcagcccggcgacacg
gccaaggccgtggtcgcccaggccgtccgccacctgccgcagtccgtccgcatctacatc
agagctgcagagctggagacggacatgagggccaagaaacgagtcctcaggaaggccctg
gagaatgtgtccaagtcggttcggctgtggaagacggccgtggagctggaggagccggag
gacgccaggatcatgctcagcagagcggtggagtgctgccctacgagcgtcgagctgtgg
ctggcgctcgcccggctggagacgtacgagaacgcccggcgcgtcctcaacaaagcccga
gagaacatccccaccgatcgccacatctggatcactgccgccaagctggaggaggccaac
ctcaacactcagatggtggacaagatcatcgacagggccatcacttctttacgcgccaac
ggcgtggagatcaaccgagagcagtggatacaggacgcagaggagtgtgacaaagcgggc
agcgtggcgacctgccaggccgtgatccgagccgtgatcggcatcggcatcgaggaggag
gactgcaaacacacgtggatggaggattcagatagctgcgtgtcacacggagcgctggag
tgtgcccgggccatctatgctcacgctctgcaggtgttccccagtaaaaaaagcgtctgg
ctcagagccgcctactttgagaagaaccacggcaccagggagtcgttggaggccctcctc
cagagggccgtggctcactgtcccaaagccgaggtcctgtggctgatgggggccaagtcc
aagtggctggccgaggacgtgcccgccgccagaagcatcctggctctcgccttccaggcc
aacccaaacagtgaggagatctggctggctgctgtcaagctggagtctgagaacaacgag
tacgaacgagcccgtcgcctgctggcgaaggcccgcagcagcgccccgacagccagggtg
ttcatgaagtctgtgaagttggagtgggtgttggggaacatagaagctgcccaggagctg
tgcaccgaggctctgaagcactacgaggactttcccaaactctggatgatgagaggccag
atagaagagcagtgtgagagcatggacaaggcccgggaggcctacaaccaagggctgaag
aagtgtccgcactccagcggcctgtggttgctgctgtcccgtctggaggagcgggtggga
cagctgacccgggccagagccatcctggagaaggctcgactcaagaacccccagagcccc
gatctgtggttggagtcggtccggctggagttccgtgcgggtctgaagaacatctccaac
acgctgatggccaaagccctgcaggagtgccccaattcaggcatcctgtgggcggaggcg
gtgtttttggaggcccggccccagaggaagaccaagagtgtggacgctctgaagaagtgt
gaacacgacccccacgtcctgctcgccgtggccaagttgttctggagcgagcgtaagatc
accaaagccagagagtggttcctccggacggtgaagatcgagccggacctcggagacgca
tgggcgctcttctacaagtttgagcagcagcatggcacagaggagcagcaggaggaggtg
cgaaagcgctgcgagaacgcggagcctcgtcacggcgagctgtggtgcgccgagtccaaa
cacgtcctgaactggcagaagaagacgggggagatattagcgggggtagcaggcaagatc
aagaacaccttctaa
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