Pungitius pungitius (ninespine stickleback): 119222806
Help
Entry
119222806 CDS
T07626
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119222806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119222806
03009 Ribosome biogenesis [BR:
ppug03009
]
119222806
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119222806
Spliceosome [BR:
ppug03041
]
Complex A
U2 snRNP components
U2 related factors
119222806
Complex B
119222806
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119222806
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
90S particles
Helicases
119222806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
119222806
NCBI-ProteinID:
XP_037335598
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MHKRHRLDLGGDNSPGKKRATEGRDRDRDCDERSRDRDRDRARDREWDRDRDVKSAGVPN
NPAASSAGFVKPAPFQQKINPFTNLPHTPRYYEILKKRLQLPVWEYRERFTEILMRNQSF
VLVGETGSGKTTQIPQWCGDMVRSMPGTKRAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVIQIHMCEVDEGDVLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQ
QQRIFEPPPPNKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEILSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHMTLLNVYHAFKQ
NHDSTQWCYENFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFNSRDYYTNIRRALVTG
FFMQIAHLERTGHYLTAKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPE
WLVKVAPQYYEMGNFPQCEAKRQLERIIAKLSSKEFSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagagacaccgtttagatttgggtggcgataattcgcccggcaaaaagagagct
actgaggggcgcgacagggaccgagactgcgatgaacgttcgagggacagggaccgcgac
cgagctcgagaccgggagtgggacagggacagagatgtgaagtcagccggggttcccaac
aacccagctgcaagcagcgccggcttcgtgaagccagccccatttcagcagaagatcaac
cccttcaccaacctgccccacacgccgcgctactatgagatcctgaagaagcggctgcag
ctgcctgtctgggagtacagggagcgcttcactgaaatcctcatgcgtaaccagtctttt
gtactggtgggagagacgggctctggaaaaaccacacagatccctcagtggtgcggcgac
atggtgcggtcgatgccgggaacaaagagagcggtggcctgcactcagcccaggagggtc
gcggccatgagcgtcgcccagagggtcgccgatgagatggacgtcatgctgggccaagag
gtgggctactccatcaggtttgaggactgcagctctgcaaagaccgtactcaagtacatg
acagatggaatgttgctgcgggaggccatgaatgatcccctgctggagcgctacggtgtc
atcatcctggacgaggctcatgaacgcacgttagccacagatatcctcatgggagtcctc
aaggaggtggtccgccagagggctgacctcaaggtgattgtgatgagtgccacgctcgat
gccggcaagttccaggtgtactttgacagctgcccactgctaaccatccccggacgcacg
caccccgtggagatcttctacacgcccgaacccgagcgggactacctggaggcggccatc
cgcacggtgatccagatccacatgtgtgaggtggatgaaggggatgttctcctcttcctc
accggacaagaggaaattgatgaagcctgcaagcggatcaagagggaggtcgacgacctg
ggccccgaagtcggcgatatcaagatcatcccgctgtactccacgctgccgccgcagcag
cagcagaggatcttcgagccgcccccacccaacaaaccaagtggggccatcggaaggaag
gttgtcgtgtcaacaaacatcgcagagacgtcgctgaccattgacggcgtggtgtttgta
attgatcccggatttgccaagcaaaaggtgtataatcctcgtatcagagtggaatccctt
ttggtgacggccatcagcaaggcctcggcccagcagagggccgggcgcgccgggcgcaca
cgcccgggaaagtgtttccgcctttacacagagaaagcctataagacagaaatgcaggac
aacacatatccagagattctgaggtccaatctgggctctgtggtgctgcagctgaagaaa
ctgggcatcgacgacctggtgcactttgacttcatggacccaccagccccagagaccctg
atgagagccctggagctgctgaactacctggcggcgctcaacgacgacggcgacctgacg
gagctgggctccatgatggcggagttccctctggacccccagctggccaagatggtcatc
gccagctgtgaattcaactgttcaaacgagatcctctcaatcactgccatgttgtcagtc
ccacagtgcttcgtccgacccacggaggctaagaaggtggccgacgagtccaagatgcgc
ttcgcccacatcgacggggaccacatgacgctgctcaacgtctaccacgccttcaaacaa
aaccacgactccactcagtggtgctacgagaacttcgtcaactaccgctcgctgatgtcg
gcagacaacgttcggcagcagctgtccaggatcatggaccgcttcagcctgccgcggcgg
agcaccgagttcaacagcagggactactacaccaacatccgccgggcgctggtcacgggc
ttcttcatgcagatcgctcacctggaacgcaccggccattacctgaccgccaaagacaac
caggtggttcagctgcacccttccaccgtgctggaccacaagcccgagtgggtgctctac
aacgagtttgtgctcacaaccaagaattacatccgcacgtgcaccgacatcaaaccagaa
tggctggtgaaagtggccccgcagtactacgagatgggcaacttcccccagtgcgaagca
aagagacagttggagcgcatcattgcaaaactctcatcaaaggagttctctcagtactga
DBGET
integrated database retrieval system
