Pungitius pungitius (ninespine stickleback): 119222864
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Entry
119222864 CDS
T07626
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04382
Cornified envelope formation
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04518
Integrin signaling
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119222864 (col4a6)
04518 Integrin signaling
119222864 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119222864 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119222864 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119222864 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119222864 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119222864 (col4a6)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119222864 (col4a6)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119222864 (col4a6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119222864
NCBI-ProteinID:
XP_062416104
LinkDB
All DBs
Position
1:complement(2358697..2411274)
Genome browser
AA seq
1702 aa
AA seq
DB search
MKFLTCVIAVALAVRSAHGGTLDEPCAGRNCGEGCRCNPEKGSRGRPGTLGELGQSGPEG
PRGGPGPTGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGTDGVPGHPGQDGGRGPSGLDG
CNGTRGDPGRPGYGYGEPGSPGYAGPFGPKGQKGEPRYVPEGLTNLPGVQGSDGQPGIIG
PIGRPGFPGPRGPEGFSGPPGPPGPPGPMGSQSNGYEGEKGDKGDVGKTGLSGTPGDGSL
TGDPTLTIYKGDKGAPGPKGFRGISGAPGQPGPFGFGGEPGETGIPGYPGGRGPPGFNGP
PGSPGLRGLRGSPGFSGTPGYDGAKGDLGDTGPAGPPAYVTDRGTSIQGSTGDPGLSGAP
GFPGDQGFPGYKGQPGAPGVGGSGGIGSDFPGQRGYPGTSGPKGETGDPGPTAYGSEGRP
GGPGNPGAAGPPGPPGPSRSRDGPCVIYPWPDSKGDPRPGEPGLPGSRGEPGERGFNGFR
GDPGDCDCLGGGGSGTTGSPGLPGRNGDPGPPGPKGGRGDGGSPGFNGVQGPPGRAGDAG
YFGRKGAKGEPFFSNRGAGLKGELGATGARGPTGETGKPGRDGIPGFPGTPGIPGDGGFG
SVGEKGFPGFPGGKGRPGAPGAPGVGYAGLPGFRGEPGDPGRDGPPGPPGSPGSKGEISC
AGVNGAGEGPGQVLPCNVDPELAEPGPPGSPGPPGVKGEPGFPGNPGRPGFDGSKGERGD
PGFGGQPGQQGFPGQRGDPGTPGSPGQSSDGPRGNNGAPGRPGSKGQPGEVLGATAGGPG
QDGFPGVPGDKGQLGTPGSPGLPGADGRFGVPGLKGEPGNNGSPGFDGLPGPPGPSFGIP
GRRGAPGGSGQRGSSGSPGRKGERGDPGFPGPAGMKGALGLPGFSGPPGPSGPPGPPGPG
TRDGFPGSPGRKGETGAAGLTGFPGLQGRPGSPGFPGVKGEPAGSGRNGLPGAPGFPGPK
GDRGYSGPPGPPSPFVPSEGLVKGDPGTPGASGLPGFPGARGDKGQSGLPGRQGLPGLPG
YADRSKGQPGQPGFPGQPGNPGFPGQKGESGIVGFPGMSGPRGDDGSPGFPGNPGEFGRP
GGKGAPGESYGYPGSPGAKGQPGDPGFPGGRGSDGAPGESGFPGGPGFPGTKGGPGEGGR
PGITGSPGFPGPKGQSSYPGESGPNGSPGLPGSPGGPGSKGLSGPPGLDGLNGLPGPKGL
PGTRGVNIGGRPGEPGVPGFKGERGVTYPGNPGFPGPKGERGDSGGPGRVGFPGLPGPPG
PTVGSNFPGPSGDPGLPGLDGEYGFMGPPGPPGPPGPGTAQGDRGDPGLPGFPGSPGRKG
DAGIPGGPGRPGSPGFKGGRGESGYGGGSGLKGYAGDPGYYGNKGARGRRGPQGQKGPPG
VVSSPPSELYGDPGFPGAAGGPGESGEPGQPGLPGRGGPKGRPGPVGKLGRTGSPGFPGP
IGDAGPPGFLGPTGAQGATGAAGRPGAPGGVGRSSSIGYTLVKHSQSSQVPMCPQGMAQL
WEGYSLLFVEGQEKAHNQDLGQAGSCLPRFNTIPFLYCSPNEVCYYASRNDKSYWLSTTA
PIPMMPVAEQQIQPYISRCSVCEAPSLPVAVHSQDMTIPTCPPGWRSLWIGYSFLMHTAA
GAEGGGQSLVSPGSCLEDFRATPFIECNGARGSCHYFANKYSFWLTTVERSQEFVYAPAQ
ETLKGGQERSRVSRCQVCSKIL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgacgtgtgtcatcgcagtcgcgttggcggtgagatctgcgcacggaggt
acgctggacgagccgtgtgccggacgcaactgtggagaagggtgccggtgcaacccggag
aaaggcagcaggggccgacccggtaccctcggtgagctcggtcagagcggaccagagggg
ccccgggggggccccgggcccaccggacctaaaggagagaagggccacattgggctgaaa
ggaccttctggccccaaaggagacaagggacctatgggagtaccgggcttccaaggaacg
gatggagtacccggtcaccctggtcaggacggagggcgaggaccatcgggactggacggc
tgcaacgggaccagaggagatccggggaggcccggctacgggtacggagaacccggctca
cctggatacgctgggcctttcgggccgaagggtcagaaaggagaacctcgatatgtccct
gagggtctgacaaatttaccgggtgtgcaaggaagcgacggccagccgggcatcataggt
ccgattggtcggcctggttttcctggtccgagggggcccgagggattcagcggcccgcct
ggtcctcctggtcctccggggccaatggggagccaaagtaacggatatgaaggggagaaa
ggagacaagggcgacgtgggtaaaaccggactcagcgggactccgggcgacgggtcgcta
accggcgaccccacgctcaccatctacaaaggagataagggggccccaggcccgaaaggc
ttcagagggatctccggcgcgcccggccaaccggggccgttcggcttcggcggtgaaccc
ggagagacgggcatccccggataccccggggggaggggcccccccggtttcaacgggcct
cccggatctccgggactacgggggctcagaggttctccgggcttctcgggaacaccagga
tacgacggagcaaagggagacctgggagacaccgggcccgcgggacccccggcctacgtc
accgaccggggcacctccatccaaggttcgacgggtgacccgggtctcagcggcgcgccc
ggtttccccggcgaccagggcttcccgggatacaaaggacagcccggcgcaccgggagtc
ggcggcagcggcggcatcggctcagatttccccggccaacgcggttaccccggcacctcc
ggtcccaagggagagacgggtgacccgggcccgactgcctacggctccgaaggaagaccc
ggcggaccgggaaaccccggagccgccggaccccccggaccccccggcccttcgagatcc
cgcgacggaccctgcgtcatctacccgtggcccgattccaaaggtgacccccgccctgga
gagcctgggcttcctggctccaggggagagccaggagaacgaggattcaacggcttcaga
ggtgatcccggcgactgtgactgcctcggaggcggcggctcggggaccaccgggtcgccc
gggctgccgggccgcaacggagaccccggccccccgggaccaaaggggggccgcggcgac
ggcgggtcgccgggcttcaatggcgtccaggggcctcccggccgcgccggggacgccggc
tacttcggtcgcaaaggagcgaagggggagcccttcttctccaaccgcggtgccggcctg
aagggagagctcggagccactggggcccgaggacccacgggggagaccggcaagcccggc
agagacggaatacccgggttccccggaacccccggcatcccgggcgacggcggcttcggc
tccgtgggggagaaaggtttcccggggttccccggggggaaggggcgtcccggcgcgccc
ggcgcgcccggcgtcggctacgccgggctgcccggcttccgcggggaacccggagacccc
ggtagggacgggccgccagggccacccggttcacctgggtcaaaaggtgaaatcagctgt
gcgggggttaatggcgccggagagggaccgggccaagtgctgccgtgcaacgtagatcca
gagctcgcagagcccggccccccaggttcaccgggaccaccaggtgttaaaggtgagccc
ggtttcccgggaaacccgggacgtcccggcttcgacggctccaaaggagagagaggagac
ccgggtttcggaggccaaccgggacaacaaggtttccccggacaaagaggagatcctggg
actcccggttctccgggtcagagttccgacggaccccggggcaacaacggcgctccgggg
cgtcccggaagcaaaggtcagcccggagaggtgctgggagccacggcggggggccccggg
caggacggttttcccggagtccccggagacaagggccagctcgggacgccagggagtccc
ggattacccggcgctgacgggcgcttcggggtccccgggctgaagggagagcccggcaac
aacgggtcccccggcttcgacgggcttcccggccctcccggcccgtcctttggcatcccg
ggtcggcgcggagcgcccggcggcagcgggcagagagggtcgtcaggttcccctggtcgc
aaaggagaaagaggagacccgggcttcccgggcccggctgggatgaaaggagccctgggg
ctgcccggcttctccggaccaccagggcccagtggaccccccggacccccggggccagga
accagagacggattcccaggaagccccggcaggaagggggagaccggcgccgcgggactg
acgggtttcccgggactccagggtcgccccggaagccccgggtttcccggagtgaaggga
gagcccgcgggatccggaaggaacggactccccggcgctcctggattccccggaccgaaa
ggtgatagaggatacagcggcccccccggtccgcccagtccctttgttccatccgaaggg
ctggtgaaaggtgatcccggaacaccgggagccagcggccttcccggcttccccggagcc
cgaggtgacaaaggtcagtcgggcctgccgggccgccagggccttccgggacttccgggt
tacgccgatcggagcaaagggcagccaggacagcccgggtttcccgggcaaccgggcaac
ccgggtttcccgggtcagaagggcgagtctggcatcgtgggattccccggcatgtcggga
cctcggggtgacgacggttcgcctggtttccccggcaaccccggagaatttggtcgcccc
ggcggaaaaggtgcacccggagaaagctacggctatcccgggagcccgggagctaaaggc
cagcccggagatccgggcttccctgggggccgcggcagcgacggcgcccccggcgaaagc
ggcttccctggaggtcccggtttccctgggacgaagggaggtcccggcgaaggagggcgt
cctggaataaccggctcgcccggtttccccgggcccaagggccagtccagctacccggga
gagtcggggccgaacgggtctcccggtctgcccggcagtcctggaggtcccggatccaag
ggtttgtccggaccccccggtttggacggactcaacggcctccctggacccaaaggcctc
cctggaacccgaggggtgaatataggaggtcgcccgggagaacccggcgtcccaggcttc
aagggcgagagaggcgtcacctacccaggaaacccgggcttccccgggcccaagggagag
agaggagactcaggcggtcctgggcgcgtcggcttccctggcctgcccggacctcccggt
cccaccgtgggctcaaattttcccgggccttctggagaccccggcctgcccggactggat
ggagagtatggtttcatgggacctccgggtcctcccggccctcctggtccaggcacggca
cagggagaccggggtgaccccgggctcccgggcttccccggctcccccggcaggaaagga
gacgcgggcatccccggaggccccggccggcccggcagccccgggttcaaaggaggacga
ggggagagcggctacggcggcggttctggtctcaagggttacgccggtgacccgggttac
tatggaaacaaaggagctaggggacgacgaggtccccagggtcaaaagggtcccccgggg
gtcgtctcgagtcccccctcggaactgtacggggacccgggtttccccggtgcagcgggt
gggcccggcgagagcggagagcccggtcagcccgggctgcccggacgtggaggtcccaag
ggtcgacccggtcccgtgggtaaactcggcaggaccggatcccccggcttccccggaccc
atcggcgacgccggaccccccggtttcctcggacccactggagcgcaaggtgctactggc
gcggcgggccgccctggcgcccccggcggcgtggggcgcagcagcagcatcggctacacg
ctggtgaagcacagccagagctcccaggtgcccatgtgtccgcagggcatggcccagctg
tgggaggggtacagcctgctgttcgtggaggggcaggagaaggcgcacaaccaggacctc
ggtcaggccgggtcgtgcctccccaggttcaacaccatccccttcctctactgctccccc
aacgaggtctgctactacgccagccgcaacgacaagtcctactggctctccacgacggcg
cccatacccatgatgcccgtggccgagcagcagatacagccgtacatcagcaggtgctcc
gtgtgcgaggcgccgtccctgcctgtggcggtgcacagccaggacatgaccatccccacc
tgcccccccggctggaggagcctctggatcggttactccttcctgatgcacacggcggcc
ggcgccgagggcggcggccagtccctggtgtcccccggctcctgcctggaggacttccgc
gcgacgccgttcatcgagtgcaacggcgcccggggcagctgccactacttcgccaacaag
tacagcttctggctcacgaccgtggagcgcagccaggagttcgtctacgcgccggcgcag
gagaccctgaagggaggccaggagcgctccagggtcagccgctgccaggtctgcagcaag
atcttgtag
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