Pungitius pungitius (ninespine stickleback): 119222864
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Entry
119222864 CDS
T07626
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119222864 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119222864 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119222864 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119222864 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119222864 (col4a6)
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119222864 (col4a6)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119222864 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119222864
NCBI-ProteinID:
XP_037335708
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MKFLTCVIAVALAVRSAHGGTLDEPCAGRNCGEGCRCNPEKGSRGRPGTLGELGQSGPEG
PRGGPGPTGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGTDGVPGHPGQDGGRGPSGLDG
CNGTRGDPGRPGYGYGEPGSPGYAGPFGPKGQKGEPRYVPEGLTNLPGVQGSDGQPGIIG
PIGRPGFPGPRGPEGFSGPPGPPGPPGPMGSQSNGYEGEKGDKGDVGKTGLSGTPGDGSL
TGDPTLTIYKGDKGAAGPKGFRGISGAPGQPGPFGFGGEPGETGIPGYPGGRGPPGFNGP
PGSPGLRGLRGSPGFSGTPGYNGAKGDLGDTGPPGPPAYVTDRGTSIQGSTGDPGLSGAP
GFPGDRGFPGYKGQPGAPGVGGSGGIGSDFPGQRGYPGTSGPKGETGDPGPTAYGSEGRP
GGPGNPGAAGPPGPPGPSRSRDGPCVIYPWPDSKGDPRPGEPGPPGSRGEPGERGFNGFR
GDPGDCDCLGGGGSGTTGSPGLPGRNGDPGPPGPKGGRGDGGSPGFNGVQGPPGRAGDAG
YFGRKGAKGEPFFSNRGAGLKGELGATGARGPTGETGKPGRDGIPGFPGTPGLPGDGGFG
SVGEKGFPGFPGGKGRPGAPGEPGVGYAGLPGFRGEPGDPGRDGLPGPPGSPGSKGEISC
AGVNGAGEGPGQVLPCNIEAELAEPGPPGSPGPPGVKGEPGFPGNPGRPGFDGSKGERGD
PGFGGQPGQQGFPGQRGDPGTPGSPGQSSDGSRGNNGAPGRPGSKGQPGEVLGATAGGPG
QDGLPGVPGDKGQLGAPGSPGLPGADGRFGVPGLKGEPGNNGSPGFDGLPGPPGPSFGIP
GRRGAPGGSGQRGSSGCPGSPGRKGERGDPGFPGPPGMKGALGLPGFSGPPGPSGPPGPP
GQGTRDGFPGSPGRKGETGAAGLTGFPGLQGRPGNPGFPGVKGEAAGPGRNGLPGAPGFP
GPKGDRGYSGPPGPPSRFVPSEGLVKGDPGTPGASGLPGFPGARGDKGQSGLPGRQGLPG
LPGYADRSKGQPGQPGFPGQPGNPGFPGQKGESGIVGFPGMSGPRGDDGSPGFPGNPGEF
GRPGGKGCPGAPGESYGYPGSPGAKGQPGDPGFPGGRGSDGAPGESGFPGGPGFPGTKGG
PGEGGRPGITGSPGFPGPKGQSSYPGESGPNGSPGLPGSPGGPGSKGLSGPPGLDGLNGL
PGPKGLPGTRGVNIGGRPGEPGVPGFKGERGVTYPGNPGFPGPKGERGDSGGPGRVGFPG
LPGPPGPTVGSNFPGPSGDPGLPGLDGEYGFMGPPGPPGPPGPGTAQGDRGDPGLPGFPG
SPGRKGDAGIPGGPGRPGSPGFKGGRGESGYGGGSGLKGYAGDPGYYGNKGARGRRGPQG
QKGPPGVVSSPPSELYGDPGFPGAAGGPGESGEPGQPGLPGRGGPKGRPGPVGKLGRTGS
PGFPGPIGDAGPPGFLGPTGAQGATGAAGRPGAPGGVGRSSSIGYTLVKHSQSSQVPMCP
QGMAQLWEGYSLLFVEGQEKAHNQDLGQAGSCLPRFNTIPFLYCSPNEVCYYASRNDKSY
WLSTTAPIPMMPVAEQQIQPYISRCSVCEAPSLPVAVHSQDMTIPTCPPGWRSLWIGYSF
LMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGSCHYFANKYSFWLTTVERSQEF
VYAPAQETLKGGQERSRVSRCQVCSKIL
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgacgtgtgtcatcgcagtcgcgttggcggtgagatctgcgcacggaggt
acgctggacgagccgtgtgccggacgcaactgtggagaagggtgccggtgcaacccggag
aaaggcagcaggggccgacccggtaccctcggtgagctcggtcagagcggaccagagggg
ccccgggggggccccgggcccaccggacctaaaggagagaagggccacattgggctgaaa
ggaccttctggccccaaaggagacaagggacctatgggagtaccgggcttccaaggaacg
gatggagtacccggtcaccctggtcaggacggagggcgaggaccatcgggactggacggc
tgcaacgggaccagaggagatccggggaggcccggctacgggtacggagaacccggctca
cctggatacgctgggcctttcgggccgaagggtcagaaaggagaacctcgatatgtccct
gagggtctgacaaatttaccgggtgtgcaaggaagcgacggccagccgggcatcataggt
ccgattggtcggcctggttttcctggtccgagggggcccgagggattcagcggcccgcct
ggtcctcctggtcctccggggccaatggggagccaaagtaacggatatgaaggggagaaa
ggagacaagggcgacgtgggtaaaaccggactcagcgggactccgggcgacgggtcgcta
accggcgaccccacgctcaccatctacaaaggagataagggggccgcaggcccgaaaggc
ttcagagggatctccggcgcgcccggccaaccggggccgttcggcttcggcggtgaaccc
ggagagacgggcatccccggataccccggggggaggggcccccccggtttcaacgggcct
cccggatctccgggactacgggggctcagaggttctccgggcttctcgggaacaccagga
tacaacggagcaaagggagacctgggagacaccgggcccccgggacccccggcctacgtc
accgaccggggcacctccatccaaggttcgacgggtgacccgggtctcagcggcgcgccc
ggtttccccggcgaccggggcttcccgggatacaaaggacagcccggcgcaccgggagtc
ggcggcagcggcggcatcggctcagatttccccggccaacgcggttaccccggcacctcc
ggccccaagggagagacgggtgacccgggcccgactgcctacggctccgaaggaagaccc
ggcggaccaggaaaccccggagccgccggaccccccggaccccccggcccttcgagatcc
cgcgacggaccctgcgtcatctacccgtggcccgattccaaaggtgacccccgccctgga
gagcctgggcctcctggctccaggggagagccaggagaacgaggattcaacggcttcaga
ggtgatcccggcgactgtgactgcctcggaggcggcggctcggggaccaccgggtcgccc
gggctgccgggccgcaacggagaccccggccccccgggaccaaaggggggccgcggcgac
ggcgggtcgccgggcttcaatggcgtccaggggcctcccggccgcgccggggacgccggc
tacttcggtcgcaaaggagcgaagggggagcccttcttctccaaccgcggcgccggcctg
aagggagagctcggagccactggggcccgaggacccacgggggagaccggcaagcccggc
agagacggaatacccgggttccccggaacccccggcctcccgggcgacggcggcttcggc
tccgtgggggagaaaggtttcccggggttccccggggggaaggggcgtcccggcgcgccc
ggcgagcccggcgtcggctacgccgggctgcccggcttccgcggggaacccggagacccc
ggtagggacgggctgccagggccacccggttcacctgggtcaaaaggtgaaatcagctgt
gcgggggttaatggcgccggagagggaccgggccaagtgctgccgtgcaacatagaagca
gagctcgcagagcccggccccccaggttcaccgggaccaccaggtgttaaaggtgagccc
ggtttcccgggaaacccgggacgtcccggcttcgacggctccaaaggagagagaggagac
ccgggtttcggaggccaaccgggacaacaaggtttccccggacaaagaggggatcctggg
actcccggttctccgggtcagagttccgacggatcccggggcaacaacggcgctccgggg
cgtcccggaagcaaaggtcagcccggagaggtgctgggagccacggcggggggccccggg
caggacggtttgcccggagtccccggagacaagggccagctcggggcgccagggagtccc
ggattacccggcgctgacgggcgcttcggggtccccgggctgaagggagagcccggcaac
aacgggtcccccggcttcgacgggcttcccggccctcccggcccgtcctttggcatcccg
ggtcggcgcggagcgcccggcggcagcgggcagagagggtcgtcaggctgcccaggttcc
cctggtcgcaaaggagaaagaggagacccgggctttccgggcccgcctgggatgaaagga
gccctggggctgcccggcttctccggaccaccagggcccagtggacccccgggacccccg
gggcaaggaaccagagacggattcccaggaagccccggcaggaagggggagaccggcgcc
gcgggactgacgggtttcccgggactccagggtcgccccggaaaccccgggtttcccgga
gtgaagggagaggccgcggggcccggaaggaacggactccccggcgctcctggattcccc
ggaccgaaaggtgatagaggatacagcggcccccccggtccgcccagtcgctttgttcca
tccgaaggtctggtgaaaggtgatcccggaacaccgggagccagcggccttcccggcttc
cccggagcccgaggtgacaaaggtcagtcgggcctgccgggccgccagggccttccggga
cttccgggttacgccgatcggagcaaagggcagccgggacagcccgggtttcccgggcaa
ccgggtaacccgggtttcccgggtcagaagggcgagtctggcatcgtgggattccccggc
atgtcgggacctcggggtgacgacggttcgcctggtttccccggcaaccccggagaattc
ggtcgccccggcggaaaaggctgcccaggtgcacccggagaaagctacggctatcccggg
agcccgggagctaaaggccagcccggagatccgggcttccctgggggccgcggcagcgac
ggcgcccccggcgaaagcggcttcccgggaggtcccggtttccctgggacgaagggaggt
cccggcgaaggagggcgtcctggaataaccggctcgcccggtttccccgggcccaagggc
cagtccagctacccgggagagtcggggccgaacgggtctcccggtctgcccggcagtcct
ggaggtcccggatccaagggtttgtccggaccccccggtttggacggactcaacggcctc
cctggacccaaaggcctccctggaacccgaggggtgaatataggaggtcgcccgggagaa
cccggcgtcccaggcttcaagggcgagagaggcgtcacctacccaggaaacccgggcttc
cccgggcccaaaggagagagaggagactcaggcggtcctgggcgcgtcggcttccctggc
ctgcccggacctcccggtcccaccgtgggctcaaattttcccgggccttctggagacccc
ggcctgcccggactggatggagagtatggtttcatgggacctccgggtcctcccggccct
cctggtccaggcacggcacagggagaccggggtgaccccgggctcccgggcttccccggc
tcccccggcaggaaaggagacgcgggcatccccggaggccccggccggcccggcagcccc
gggttcaaaggaggacgaggggagagcggctacggcggcggttctggtctcaagggttac
gccggtgacccgggttactatggaaacaaaggagctaggggacgacgaggtccccagggt
caaaagggtcccccgggggtcgtctcgagtcccccctcggaactgtacggggacccgggt
ttccccggtgcagcgggtgggcccggcgagagcggagagcccggtcagcccgggctgccc
ggacgtggaggtcccaagggtcgacccggtcccgtgggtaaactcggcaggaccggatcc
cccggcttccccggacccatcggcgacgccggaccccccggtttcctcggacccactgga
gcgcaaggtgctactggcgcggcgggccgccctggcgcccccggcggcgtggggcgcagc
agcagcatcggctacacgctggtgaagcacagccagagctcccaggtgcccatgtgtccg
cagggcatggcccagctgtgggaggggtacagcctgctgttcgtggaggggcaggagaag
gcgcacaaccaggacctcggtcaggccgggtcgtgcctccccaggttcaacaccatcccc
ttcctctactgctcccccaacgaggtctgctactacgccagccgcaacgacaagtcctac
tggctctccacgacggcgcccatacccatgatgcccgtggccgagcagcagatacagccg
tacatcagcaggtgctccgtgtgcgaggcgccgtccctgcctgtggcggtgcacagccag
gacatgaccatccccacctgcccccccggctggaggagcctctggatcggttactccttc
ctgatgcacacggcggccggcgccgagggcggcggccagtccctggtgtcccccggctcc
tgcctggaggacttccgcgcgacgccgttcatcgagtgcaacggcgcccggggcagctgc
cactacttcgccaacaagtacagcttctggctcacgaccgtggagcgcagccaggagttc
gtctacgcgccggcgcaggagaccctgaagggaggccaggagcgctccagggtcagccgc
tgccaggtctgcagcaagatcttgtag
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integrated database retrieval system
