KEGG   Pungitius pungitius (ninespine stickleback): 119222865
Entry
119222865         CDS       T07626                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug04382  Cornified envelope formation
ppug04510  Focal adhesion
ppug04512  ECM-receptor interaction
ppug04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    119222865 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    119222865 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    119222865 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    119222865 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ppug04147]
    119222865 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:ppug00536]
    119222865 (col4a5)
Exosome [BR:ppug04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   119222865 (col4a5)
Glycosaminoglycan binding proteins [BR:ppug00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   119222865 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 119222865
NCBI-ProteinID: XP_037335713
LinkDB
Position
1:2412779..2435389
AA seq 1679 aa
MNRLLEAPRRLAAPLLLFALCVAVQRTDSAACHGCVGSTCDCSGVKGSKGERGFPGLTGQ
PGVPGFPGPEGPIGGRGEKGSDGPQGLYGPKGIRGPSGLPGFPGTPGLPGLPGQDGAPGP
RGVAGCNGTKGEIGYPGNSGIPGQPGRLGPPGLPGPKGDPGDVIPVNNFGSPGAEGLPGL
PGLPGAPGPSGLQGPIGPPGPRGYEGSPGPPGPPGPKGNMGLNFQGPKGMKGEQGTSGPP
GPPGQVGEQVGTKDSVIQRGDKGEPGFPGPSGDPGYPGPPGPSGGQKGTKGEPGEAGKRG
KAGKDGDPGPPGFPGGKGDPGPPGPAGRDGERGQKGDRGYPGPPGVVIGGGGGGLIGPKG
EPGYPGSPGIKGDRGPSGLSGPPGEPGRPATGGGGQSGPPGYPGERGQKGDQGPQGRTLP
GPPGRQGPSGLPGPQGLPGPPGSSSGGSDCASGVPGFPGVQGERGYPGEPGFKGEKGDTC
VNCFTDTSGIPGPPGPAGQPGFPGSPGSPGIKGDRGFSGTPGAVGPPGNPGPLGSPGFPG
EKGDPGEVITVDGVRGEKGDTGFPGSPGLPGLDGRPGRDGQPGAPGTKGAPGSLLVKGER
GPPGEPGSSGIPGDRGPPGSPGYGPPGSSGEKGVQGVSGRPGNAGFPGTKGEPGLAVGKK
GEPGQRGSPGSSGQPGLRGDPGQPGRDGFPGSPGGKGEPGLPGIGLPGPPGVKGFPGVAG
QPGSPAAPGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGVPGSPGAKGFSGPKGDPGFPGG
PGSPGRSGFDGSPGFKGEPGLPGIPGARGPPGNPDAGAVGPPGPPGLPGQMGLPGNPGSN
GGKGDPGPPGLDIPGLPGDRGSPGFPGSPGAVGPPGPFGGPGRDGQPGLPGQKGDMGLMG
SPGPSGGPGIPGGPGAPGLKGDSGFPGRDGNPGGPGFKGDRGDPGLPGPPGQSTPPENLK
GSKGEPGQPGSPGFSGQKGIPGLPGDPGPGGSDGRPGQPGPPGPKGDSGFPGGPGATGPP
GLKGAMGEMGFPGPSGQKGLPGQPGRSGSPGQPGGSGFPGAKGEPGSAGVGPPGLSGQKG
EPGQSGFPGVSGLKGTPGSPGLPGIPGGPGPKGDPGLPGFQGSPGSPGPKGLDGGFGSPG
VPGAPGRPGESGRPGSPGFPGDKGQAGRDGIPGPAGIKGDPGLPGYGGPGSPGLPGLPGS
KGDPGLPGPPGVNGFPGSKGDAGFPGSPGPLGNPGPAGPPGQALQGPKGLQGSPGPPGRG
GSPGPQGPRGPAGSGGVKGEKGIPGASGQPGFAGQKGDSGVPGFPGPPGQPGGSGQKGDI
GLPGVPGFPGPKGDLGSPGGNGLPGDPGDVGSPGPPGDSVPSTYQKGAQGLPGPRGLTGG
RGLPGTPGRDGSPGAPGETGAPGPEGPPGFSGPPGRKGDSGPAGQPGQRGFSGPPGSDGP
PGVPGPPGSGSSAHGFLITRHSQGQEVPFCPQGTGLIYDGYSLLYVQGNERAHGQDLGTA
GSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEGIKPFISRCAV
CEAPAMVIAVHSQTIQIPSCPSSWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQAETLKAGNLRTRVSRCVVCMKRT
NT seq 5040 nt   +upstreamnt  +downstreamnt
atgaaccgactcctggaggccccgcgacggctcgcggcgcctctgctcctcttcgcgctg
tgcgtcgcggtgcagcgaaccgactctgcggcttgccacggctgcgttggatccacgtgt
gactgcagtggagtgaaaggatccaagggcgagcgcggcttcccgggactcaccggacag
cccggcgtgccgggcttccccggacccgaggggccgatcggaggcagaggagagaagggg
agtgatggaccacaaggactttatggtccaaagggaatcagaggaccgtctggattgcca
ggatttccaggaacaccaggacttcccggtctgcccgggcaggacggagctccggggccg
agaggtgtggccggctgcaacgggacgaagggggaaattggttacccgggaaattccgga
attccgggacagccggggcgattgggcccccccggtctgccaggaccaaagggcgacccg
ggggacgtgatcccggtcaataactttggatcgccgggagcggagggattgcccggactg
ccgggccttcctggagctcctggaccctccggtctgcaaggtccaatcggtcctccagga
cccagaggctacgagggttctccaggtcctccaggccccccaggaccaaaaggaaacatg
ggattgaacttccaagggcccaaagggatgaagggggaacagggcacatccggacctcct
ggtcctccagggcaagttggagaacaagttggaacgaaagatagcgtgattcagagagga
gacaagggtgaaccaggtttcccggggccctcaggtgatccaggctacccaggaccccct
ggtccctcgggtgggcagaaaggaaccaagggagagccaggtgaagcgggaaaacgcggc
aaagcaggcaaggacggcgatcccggccccccaggcttccccggaggtaaaggggaccca
ggcccgccaggccctgccggcagagatggagagagagggcagaagggcgatcgtggatac
ccaggcccgccaggagtggtaatcggtggggggggaggaggtctgatcggcccgaaagga
gagcccggctaccccggctcacccgggatcaaaggagaccgaggcccatcaggcctatcg
ggacctccgggggaaccgggtcgcccggctaccggaggtggaggtcagtccggacctccc
ggctacccaggagagagaggccagaagggagaccagggcccccaagggcgtactttgcca
ggtccgccgggacgtcaggggccttctggtctcccgggcccgcaggggctccccggaccc
ccgggctcttcttccggaggatcagactgcgcctctggagtgcccgggtttcccggcgtg
cagggagagagaggctacccaggagaacccggatttaaaggcgaaaagggcgacacctgc
gtaaactgcttcacagacacttccggcatccccggaccaccgggacccgcgggacaaccc
ggattccctggatctcccggctccccggggatcaaaggagaccgaggattttcaggaacg
cctggggccgtcggaccccctggcaaccccggccctctcggttccccgggattccccgga
gaaaagggagacccgggcgaggtcatcacagtcgacggtgtcaggggagagaagggtgac
accggtttccccggatcgcccggccttcccggtctggacggtcgacccggtcgcgacggt
cagccgggggcccccggcaccaaaggagcacccggctctctgctggtgaaaggagaacga
ggcccccccggtgagcccggctcctcgggtataccgggagacaggggtcctccgggaagc
cctggttatggacccccgggatcatcgggagagaaaggagtccagggcgtctcgggaaga
cctggaaatgccggttttccaggtaccaaaggggaaccgggcctggcggtgggtaagaaa
ggcgagccaggacagaggggatctccgggctcgtctggacagcccggcttacgaggtgac
ccgggtcagcccggacgggacggtttccctggttctccgggaggcaagggagagcctgga
ctccctggcattggactcccgggacccccaggggtcaaaggattcccaggtgtcgcaggc
cagccaggatctcctgcagcaccaggtagaccaggagtagatggactccctggccagcct
ggatttcctggaccaaagggggagcccggatttggccttcctggccccccaggtgtacca
ggatcacctggagcgaaaggcttctccggaccgaaaggagaccctggcttccccggcggc
cctggctctcccgggcgctctggatttgacggctctccaggatttaaaggtgagcccggt
ttgccgggtatacctggagctcgtggcccacctggaaaccccgacgccggcgcagtgggg
ccgccgggaccacccggcctccctggccaaatgggactcccagggaaccccggatcaaac
ggagggaagggagaccccgggcccccgggtctagacatcccaggtctgccaggagacaga
ggaagtcccggcttcccaggttcccccggcgccgtcggaccgccagggccttttggagga
cctggacgggacggccagcctggtttaccgggtcagaagggagacatgggtctaatggga
tccccaggaccctctggaggaccaggaatcccaggagggcccggcgcccccggactcaaa
ggcgactctgggttccccgggagggacgggaatcctggcggtcccggtttcaaaggtgac
cgaggtgatcctggcctcccgggacccccaggacaaagcacgccaccggaaaatttgaaa
ggatccaaaggagaacccggacaaccaggttcaccgggtttttcaggtcagaaaggcatc
cctggtctccccggtgaccccgggcctgggggatccgatggacgtccaggacaacccgga
ccaccaggtcccaaaggagattctggcttcccaggtggcccaggtgctactggacctcca
ggactaaaaggtgccatgggagagatgggtttcccaggaccatcggggcagaagggtcta
cccggtcagcccggtaggtctggatccccgggacagccaggaggatccggtttccctgga
gccaaaggtgaaccaggctctgctggagtcggaccaccgggactatctggacagaaggga
gaaccaggtcagtcagggttcccaggagtttcaggacttaaaggaacacctggatcacct
ggtctcccaggcattcctggagggccagggcccaaaggtgaccccgggctccccggattc
caaggttccccgggtagccccggtcctaagggtctcgacggcgggttcggtagcccaggt
gtccccggagctcccggtagaccgggagaatccggccgaccaggatcaccagggttccca
ggagacaagggccaggcaggtcgggacggaatcccgggaccggccgggatcaaaggagat
ccagggcttcctggttatggtggacccggctctcctgggcttcccgggctgccaggttcg
aagggagacccgggtcttcccggcccgcctggcgtcaacggattcccaggatccaaagga
gacgctggtttccccggatctcctggtcctttaggcaaccctggtcctgccggacctcca
ggccaagctctgcagggccccaaggggctacagggatcccctgggccaccaggaagagga
ggctccccaggccctcagggtccccgagggcccgccggaagcggcggcgttaagggagag
aagggcatccccggcgccagcggacagcccggcttcgctggacagaagggagacagcggc
gttcccggattcccaggcccccctggtcagcccggtggttcgggtcaaaaaggagacatc
ggtcttcctggcgttcccggattccccggaccgaagggcgacttgggatcccccggagga
aacgggctccccggagaccctggagatgtcggatcccctggccctcctggtgactcggtt
ccatcgacctatcagaagggagcgcaaggactccccgggcctcggggcctgaccggtggt
cgaggacttcccggcacccctgggcgagacggaagtccaggtgctcccggtgaaaccggg
gccccgggtcccgagggtcctccgggcttcagcggcccccccggcaggaagggagacagc
ggaccagctggtcagcccggtcagcgtggcttctccggcccccccggttcagacggcccc
ccgggagtccccggccctccgggatcgggttcctccgcccacggcttcctgatcacgcgc
cacagccagggccaggaggtgcccttctgcccccaggggaccggcctcatctacgacggc
tactccctgctgtacgtgcagggcaacgagcgggcccacggccaggacctcggcacggcc
ggcagctgcctgcggcggttcagcaccatgcccttcatgttctgcaacatcaacaacgtg
tgcaacttcgcctcccgcaacgactactcctactggctgtccacgccggagcccatgccc
atgtccatggcccccatcaccggagagggcatcaagcctttcatcagcaggtgtgcggtg
tgtgaggctccggccatggtgatcgcggtgcacagtcagaccatccagatccccagctgc
ccctccagctgggaagccctgtggatcggatactccttcatgatgcacaccagcgcgggt
gcggagggctccggtcaggccctggcctcccccggctcctgcctggaggagttccgcagc
gccccgttcatcgagtgccacggcagagggacgtgcaactactacggcaactcctacagc
ttctggctggccaccgtggagccctccgagatgttcaggaagccccaggcggagaccctg
aaggcgggtaacctacggacgcgggtcagccgctgcgtggtctgcatgaagaggacgtag

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