Pungitius pungitius (ninespine stickleback): 119223205
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Entry
119223205 CDS
T07626
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X3
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ppug01009
]
119223205 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119223205 (hdac6)
04131 Membrane trafficking [BR:
ppug04131
]
119223205 (hdac6)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119223205 (hdac6)
Enzymes [BR:
ppug01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119223205 (hdac6)
Protein phosphatases and associated proteins [BR:
ppug01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119223205 (hdac6)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
119223205 (hdac6)
Membrane trafficking [BR:
ppug04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
119223205 (hdac6)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
119223205 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
CMI2B-like
Motif
Other DBs
NCBI-GeneID:
119223205
NCBI-ProteinID:
XP_037336269
LinkDB
All DBs
Position
1:13009302..13029061
Genome browser
AA seq
1077 aa
AA seq
DB search
MQSGSDSPDPGQKSVRRSPQRSSKGKDERKGGYLLKEVKRRGRMERSRDEEEEEEEELID
RLQALDVSRRSKVTGTGLVYSEIFTHHKNLRDSSHPETPDRVTSIMEELDRQDLLSHCTT
VQIREAVEEELLMCHTKQYVDLMKSTQTMTESELQILSEGYDSVYIDPESYKVCVSAVGS
VLQLVDMVIKSELRNGFAVIRPPGHHAQANEANGFCVFNNVAIAARYAQSRHAVRRVLIV
DWDVHHGQGIQYQFQDDPSVLYFSVHRYEQGSFWPHLLESDCHFVGCGRAEGKNINLPWN
KTEMTDADYIAAFQQLLLPVAYEFHPQLVLVSAGFDAAVGDQKGEMCVSPQCFHILTHML
MSLAEGRLILVLEGGYNLQSTAESAAACVRALLGGACPPLTPPTAPSDSALQSISQTASA
LYPHWASLQTLEGGPLAESRVTRANQQTTKRMEAAPFVAPVTGLVYDERMMEHQNMWDRN
HPEQPQRIFKIFSKHQQLGLVDRCQRIQARLATEEELSRCHSVQHIEQMKATAVMKPREL
HKLGQEFNSIFINNHSFQSALLAAGGCFSAVERVLTGQVSNAVVIVRPPGHHAERDSPCG
FCFFNTAALAARHAQKLSHDAPLRVLILDWDVHHGNGTQHMFEDDDSVLYVSLHRYDNGM
FFPSSTDAAPDRVGVSKGAGFNVNVAWSGGQMGDSEYLAAFHSVVMPIATEFNPGLVLVS
AGFDAARGDPLGGYRLTPEGYAHLTHRLMSLAGGRVLLILEGGYNLTSISESMAMCTSVL
LGDPLPSLVTPLPPPHYRAVATINEVIRHHAPYWLSLRIHIPQSVRSSLTALKHRGIRSS
KGKGRKSGTSSTNKPPLPPAGPEGSTEVSSLALLTQGLAGLDLSQSSANCTAATTTVGGV
ACLTRDETGEQSQSAESTVLPSQTVAPGAGEASAAGAELETDGAHGWSKSETCLELMCGG
QKEAPQYVVEPLSWCPHLDAVKPLPASGIDVFQSCQDCGSGAENWTCLTCYQVFCGRYVN
EHMVTHGVVTQHPMVLSFCDLSVWCYLCEAYVHHQILFRAKNAAHSAKFGEEIPPWS
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctggatcggattctcctgatcctggtcaaaagtcagtccggaggtctccacag
agaagcagtaaagggaaggatgaaaggaaaggaggatacctgttgaaggaggtgaaaagg
agaggaaggatggagaggagcagagacgaggaggaggaggaggaggaggagctcatcgac
agactgcaggcgctggacgtgtcccgcagatcaaaggtcacaggaacaggtcttgtttac
tctgagatcttcactcatcataagaacctgagagactccagtcatccagagacacccgac
agagtgacgtccatcatggaggagctggacagacaggacctgctgtctcactgcactaca
gtgcagatccgagaagctgtagaagaagagctgctgatgtgtcacacgaagcagtacgtt
gatctgatgaagtcgacccagacaatgacagaaagtgaacttcagattctgtctgaggga
tacgactctgtgtacattgatcctgagtcctacaaggtgtgtgtgtctgcggtgggttct
gtcctccagctcgtcgatatggtcatcaagtctgagctcaggaacggatttgctgtaatc
agacccccaggtcatcacgctcaggccaacgaggccaacgggttctgtgtcttcaacaat
gtggctattgcagctcgatacgctcagagcagacatgccgtccgccgggtgttgatagtg
gactgggatgttcatcatggtcagggaatccagtaccagttccaggatgaccccagtgtc
ctgtacttcagtgtccacaggtatgagcagggatctttctggcctcaccttttagagtct
gactgtcactttgttggctgcggacgagctgaaggaaaaaacatcaacctgccctggaac
aaaactgagatgacagatgcagattatattgcagcttttcaacaactcttactccctgta
gcttacgagtttcatcctcagctggttctggtctctgctggatttgatgctgcagttgga
gatcagaagggagagatgtgtgtctctcctcagtgttttcatatcctcactcacatgctg
atgagtttggctgaaggtcgacttattttagttctggagggaggttataacctgcagtcc
acagcagagagcgctgcagcctgtgtcagagctctgctgggaggagcctgtcctcctctg
accccgcccaccgcaccctctgacagcgctctgcagtccatctctcagacggcctcagct
ctgtatcctcactgggcctctctgcaaacactggaaggcggcccattggctgagagtcgt
gtcacgagggccaatcaacaaaccacaaaacggatggaagcggctccctttgttgccccg
gtgacgggtctggtttatgacgagaggatgatggagcaccagaacatgtgggacagaaat
catcccgaacagcctcagagaatcttcaaaatcttctccaaacaccagcagctgggattg
gttgatcgttgccaacggatacaagctcgcctagcaacagaggaggagctgtccaggtgt
cacagtgtacagcacatagagcagatgaaggccaccgcagtgatgaagcccagagagctg
cacaaactgggtcaagagttcaactccatcttcatcaacaaccacagcttccagtcggct
ctgctggctgctggaggatgtttctctgcagtggagcgagtcctcacaggacaggtgagt
aatgccgtggtcatcgttcgccctcctggtcatcacgccgagagagactctccatgcgga
ttctgtttcttcaacacggccgctctcgccgctcgtcacgctcagaagctatcccatgat
gcacctctgcgcgtactcatcctggactgggatgttcatcacggcaacgggacgcagcac
atgtttgaggatgacgacagcgtcctgtacgtctccctccatcgctatgacaacgggatg
ttcttcccgtcttcaacagacgccgctcctgaccgggtgggcgtttcgaagggggcagga
tttaacgtaaacgtggcatggagcggcgggcagatgggagattcagagtacttggctgcc
tttcacagcgttgtcatgccgatcgccactgagtttaatccgggtctggttctggtgtcg
gccgggtttgatgcagctcggggggatcctctgggtggatatcgtctgacccctgaggga
tacgcccacctcacacaccggctgatgtcactggcaggagggcgggtcctactgatactg
gagggaggttataacttgacctccatctctgaatccatggcaatgtgcaccagcgtgttg
ctaggagaccctctcccctccttagtgactcccctcccccccccgcattaccgcgctgtg
gcaacaatcaatgaagtcatccgtcaccatgccccctactggctatcgctgaggatacac
atcccacagtcggtgcgatcgtccctaacagccctgaagcatcgtggaatacgtagttct
aaaggaaagggcaggaagtcagggacaagcagcacaaacaaacctccgctgccccctgca
ggaccggagggttccacggaagttagcagtctggcgctgctcacccagggattggctggg
ttggacctcagccaaagctcagccaattgcactgcagctacaacaacggtggggggcgtg
gcctgcctcacccgggacgagactggtgagcagagccaatcagcagagagcactgtgctg
ccgtctcagactgttgcccctggagctggcgaagctagcgcagcaggggcggagctagag
actgacggagcgcatggttggtccaaatctgagacgtgtctggagctgatgtgtggagga
cagaaggaagcccctcagtacgtggtggagcctctgtcctggtgtcctcacttggatgcg
gttaagcccctccccgcctctggtatagatgtcttccagtcgtgtcaggactgtggctct
ggcgctgagaactggacctgtctcacctgctaccaggtgttttgtggtcgttatgtaaat
gagcacatggtgactcacggggttgtgacccaacacccgatggtgctgagcttctgtgac
ctgtctgtgtggtgctacctgtgtgaggcctacgtccaccaccagattctgttcagagct
aaaaacgcagctcacagcgccaagttcggagaggagatccctccatggagctga
DBGET
integrated database retrieval system
