Pungitius pungitius (ninespine stickleback): 119223292
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Entry
119223292 CDS
T07626
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119223292 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ppug04091
]
119223292 (frem1a)
Lectins [BR:
ppug04091
]
C-Type lectins
Lecticans
119223292 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Calx-beta
Lectin_C
Motif
Other DBs
NCBI-GeneID:
119223292
NCBI-ProteinID:
XP_037336412
LinkDB
All DBs
Position
1:12273581..12299177
Genome browser
AA seq
2179 aa
AA seq
DB search
MKAMGSRGQALVWIRLPLLLVVITCSSHSSLIKVNNGVTVKRGQSVYLQEGDLQFHIPRQ
KDACKVEVVLNEPITQRVGKVLPQVFDCHYRTDEVKYIHNGCPLLNEDTVALRLYRFTET
ETYMEMFFLHVEIMEPECSIIKLGPKSLKVREFYGFSDAVDGNVVSFHYEERSSLECSVH
LSSHDTHLPAHGQLVTGEPEKAMKRGDEPESFIHLRQQLDNKATAMCKSEDCLKGLKLMK
STKIPCDDFLLMGLKYQYIDPPSPDIDYIAIRLDLKDTRSGSTYQSEQAWIPVHLVGALP
NQPPKPSFMSMFILEVDQFILTPLSTAVLDTEDEETPKQLLVFNITKPPVNGFIAHLSDQ
TRPISSFTWLDLNEMLIGYQPPNSSHTQRRNYEMEFEVHDFFFEKSPPMTVHMSVRNADT
NAPRVSWNMGLSLLEGQSRPIRWEQLQIVDNDNLAAVRIITVDGLQHGRLTVRGGKGFMF
TVNDIKAGVVRYHHDDSDSTKDHIIFRITDGYHQTRHKFPIKILPKDDSPPVLITNMVLE
VSEGQMALLRGSTLQASDMDSSDDYILFNITRPPRGGEVIKIPTSGHTGYRVSHFLQRDL
SRSMVYYRHQEKVFDDSFEVVLSDFHDPPNLSEPQVVVVHIEPAPDQPPKEVPGSSRCLV
IKETEVVHITRQQLHFEDPESPDSELTYTVTTPPFYAGPHSRPDAGRLFLVDSIPKFNKD
PNAPVLRLFTQHAVNFMKIAYMPPVMDIGPYPQYIQFVLSVTNYLGKTVSGICFNITVVP
VDNQPPQVITNPPTVDEGGHCRLGPEHLLVSDVDSVESKLQVALQREPQHGALQLGNLPL
RPGQAFTVNDLKSLKVRYNHDGSETVEDHIEFTATDGSNPVNFFLQVKVLPINDEVPVLL
DGLKPVLSCAEGQEIVITSEYIFAADADSDNSSLTFLIARQPHHGVVCRDSVVVDRFIQA
DITARIITYKHTGLEIGLTPRHDTITFVISDGETENSASCCGEQNPTQTGDKTQLLRKSL
PVYDLQITVFPIDNQPPSLTTEDIFTVDEGGSAPMTASHLKASDLDTVLDELVFSLISSP
QFGYIENVLPSPGFEKSNTGISIASFLYKDLIDGHVNYVQSRHQRMEPTADQFMLCVSDG
KHSSAHVPFYIIINPTNDEIPQFVAQNITVREGEMKQLDSSVLHAVDLDVPKDSLVFNVV
KAPQHGSIVIHGSEKSANKRREADARSRVVDFTMTDLSDGMDLMYMHDDSENEEDSFTIQ
VTDGRHRLQRKVMVKVLPVNDEEPRVIRNNGLEVERGQGRLISSVALFAQDSDTPSSCVM
YIFDSTPTQGLLQLKEGPEWRTLSVRRNCTQQMVDMNLLRYVNTHLHSADTQDFFTFYLS
DGKNQSPPQHFHISVKDVEKGNIALFVKTANVSRGDRVLLTTDVLLATDGTESPEDLVYV
IVKPTAHGHVEYIKHPGLAITTFSQMDIAANLVAYIHDKRATTPTETFQFVVSNGKNSRN
GSFEIAVEMVDRILPSLSSNKGLSVPQGSSMVLGPGCLGLSDPDTPPSALTFVLLQPPQY
GRLLLGGSRLTIGSNFTQRDVDKLEVTYKHDGGASQIDRFAFTAADSTKRGMLLDGQLYT
EPVFFTIQIKPLDRSCPEVVKLLPLWQAEPLGDGRHGILISSRELKAQDSNSKEEELIFC
IVRQPYFGYLEHMTTGGFVSQRFTQMELHRRTIAYIINPDGKSLSDSLEFTVSDPLGNTG
PSHLLEFSWSSVELSQPEYSVCEEQGAFSLDIIRRGNLAESSYVTIKVKEGTASAGKDFV
TSYSSLIQFGPGVSKRSWQIQLIQDHLEEAVEMFEVLLVSPEGTVIGSIDKAPVTIRDSG
SGQTKLNQDQAKEVWSDTYPQHGSIQLEKLPLGTESVIWSRGDSRLGAHVPKNKLKVLGN
PKSIPPSSVFHNETDIVYTYNGIMQMQVEDNTSPLRKERKANIRVVSRGAQQQGPAVLTK
SKSGHHRNISTNPEKIALAKGHAEANSIPKPCVPQLMGLLHFHQTTNQLFHCDGVSWKPW
APTDEMVSAQMCPRGWTFHGGYCHFLSTEQKVAWSTANRVCRERYKGTLVSVLSKVKMDW
LWDFSERKPFWIGLNDRDGRGRWEWAGGEPVSYTNWRKTPSHSKRKGNKRCVLVWRKAKW
QVRDCKTSTAHRFVCSIKT
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgatgggctcacgtggtcaagcactggtgtggatcaggcttccactgcttctg
gtggtaataacctgctcatcacacagttccctcataaaagtcaacaatggtgtaacggtg
aaacgaggtcagtcagtctacctccaggaaggtgacctgcagttccatattccccgtcag
aaggacgcatgcaaggtggaggtggtgttaaatgaacccataactcaacgagtgggtaaa
gtcttgcctcaggtatttgattgccactatcggactgatgaggtaaagtacatccacaac
ggatgtccgttgttaaatgaggacactgtcgcgcttcgactatacaggttcacagagaca
gagacatacatggagatgttttttctccatgtggaaattatggaacctgaatgcagcata
ataaagctgggacccaaatccctgaaggttcgtgaattctacggcttctcggatgccgtg
gatggcaatgtggtgtccttccattatgaggagagatctagtctggagtgtagtgtccat
ttgagtagccatgacacccacctgcccgcccatggccagctggtcaccggagagccagag
aaagctatgaaaagaggggacgagccagagagcttcatccacctacgccaacagcttgat
aataaagccacagcaatgtgtaaatctgaagactgcctgaaaggtctgaagctaatgaag
tccaccaaaattccctgtgatgacttccttttgatggggctaaagtatcagtacatagat
cctccatctccagacatagactacatcgcaatcagactggatctcaaggacactcggagt
ggcagcacatatcagtctgaacaggcctggattccagttcatttagttggtgctttgccc
aaccaacctcccaaaccatccttcatgtccatgtttatccttgaagtggaccagttcatc
cttactccactctccactgctgtactggacactgaagacgaggaaactcccaaacaactt
ttggttttcaacatcaccaaaccacccgtgaatggcttcatcgcccatctgtccgatcaa
acccgtccaatttcttcatttacatggcttgatctcaatgaaatgctcatcgggtatcaa
cctccgaactcatcacacacccaacgcaggaattacgagatggaatttgaggttcatgat
tttttctttgagaagagcccgccaatgactgttcacatgtctgtaagaaatgcagacaca
aatgcaccgagggtttcctggaacatgggcctcagtctgttggaaggacagtctcggcca
atacgttgggagcagctacagattgttgacaacgacaacctggctgctgttcgcatcatc
acagtggacggcctgcagcatggacggctcactgtcagagggggaaagggctttatgttc
actgtcaatgacatcaaagcgggcgttgttcgctatcaccacgacgacagcgactccacc
aaagaccacatcatcttccgcattactgacggctaccatcagacacgacacaagttcccc
attaagatcctgccgaaggacgacagccctccggtcctcatcaccaatatggtgctggag
gtgtctgagggccagatggctttactgagaggctccaccctgcaagcttcagacatggac
tccagcgacgactacatcctctttaacatcacccgacccccacggggaggggaggtcata
aaaatcccaacgtcaggacacacaggttatcgtgtcagccactttctgcagagggacctc
tcccggtccatggtttattatcgacaccaagaaaaagtgtttgatgactcctttgaagtg
gtgctgtctgatttccatgacccccccaacctgtcagagccccaagttgtggtggtgcac
atagagcctgctccagaccaaccacctaaagaggtccctggctctagtcggtgtcttgtg
atcaaagaaacagaagtggtccacataacacgtcaacagcttcactttgaagaccccgag
tctccagacagtgagcttacatatacggtcacgactccgcctttttacgctggtccgcac
agcaggccagatgccgggaggttgttcttagtcgacagcattcctaaattcaacaaagac
cccaatgcaccggtgctgaggctctttacacagcatgcggtgaacttcatgaaaatagcc
tacatgcctccagtcatggacatcggcccttatccccagtacatccagtttgttctctct
gtaaccaactacctgggcaaaacagtctctgggatctgctttaacatcactgtggtgcca
gtggacaaccagccgccacaggtcattaccaaccctccaactgtagatgaaggaggccat
tgccggcttggccctgagcacttgttggtatcagacgtggactctgtagaaagcaagctg
caggtggcacttcagcgagaaccgcagcatggagctctgcagcttggcaatctcccgctt
agaccaggccaggctttcactgtgaacgacctgaaaagcctcaaagttaggtacaatcac
gacggctcagaaactgtagaggaccacattgaattcacagcaacagatggctccaatcca
gtcaattttttcctgcaagtgaaggtgttgcccatcaatgacgaggtcccagtgttgctg
gatggtctgaaaccggttctcagctgtgcagaagggcaggaaattgtcattacatcagag
tacatctttgctgctgacgcagacagcgacaacagcagcctgaccttcctgatcgcccgg
cagccacatcatggcgtcgtttgccgagactccgtcgtggtggatcgtttcatccaggct
gacatcactgcaaggatcataacctacaaacacacaggactggagattggactcactcct
cgccatgacaccatcacctttgttatatctgatggagaaacagaaaactctgcttcatgc
tgtggtgaacaaaatcccacccagaccggagacaagacgcagctgctgcgaaagagtctg
ccggtttatgacctccagatcactgtgtttccaattgataaccagccaccttcactaaca
acagaagacatctttacagtggatgaaggtgggtctgcccccatgactgcatctcatttg
aaggcctctgacctggacacagttctggacgaactggtgttcagtctcatttcatcgccc
cagtttggctacatcgaaaatgtcctgccaagtccagggtttgaaaaaagtaatacaggc
ataagcattgcttcctttttgtacaaagacctcattgacgggcatgtgaactacgtgcag
tccagacaccagaggatggagccgacagctgaccagttcatgctctgtgtatcagacggt
aaacacagttctgcacatgtccccttctacattatcataaacccaacgaacgacgagatc
ccacagttcgtggctcagaacatcacagtgcgagaaggagaaatgaaacagctggactcc
tcagttttacatgcggtggatctggatgtccccaaggacagcttggtcttcaatgtggtc
aaagccccgcagcacggcagcatcgtcatccatggcagtgaaaagtcagccaacaagaga
cgagaggccgatgcacgttcccgtgtggtggacttcacaatgacagatctctcggatggt
atggatctgatgtacatgcacgatgactcagagaatgaagaggacagtttcaccattcag
gtgactgatggcaggcaccgactccaaagaaaagtgatggttaaagtgctgccagtcaac
gacgaagagcctcgcgtcatcaggaacaatggcctggaggtggaacggggacaaggcagg
cttatttccagcgttgctctctttgcacaggacagtgacactccttcttcatgcgtcatg
tacatatttgacagtacacccacccaaggactacttcagctgaaggaaggtccggaatgg
aggacactgtcagtgcggaggaactgtacccaacagatggtggacatgaaccttctgcgc
tatgtgaacacacacctgcacagtgctgacacacaagacttctttaccttctacttgtcg
gatggaaagaatcaatctcccccacagcacttccacatctctgtcaaagatgtggaaaaa
ggaaacattgccttgtttgtgaagacggcaaacgtcagccgtggggaccgtgtgcttctc
acgacggacgtgctgttggccacagatggcacggaatcgccagaggaccttgtgtatgtc
attgttaagcccacggctcacggacacgtagagtacatcaagcatcctggactggcaatc
actaccttcagccagatggacatagcagccaacctcgtggcgtacatacacgacaagcga
gccaccacacccacggaaacctttcagtttgttgtgagtaatggtaaaaacagccgaaac
ggaagctttgagatcgcagttgaaatggtggaccgcatcctgccgtctctgtcctcaaac
aaaggcctctcagtaccacaaggctcctccatggttctgggtccaggttgcctggggttg
tctgaccccgacactccacccagcgccctaacctttgtcctcctccagcctccacagtat
ggcaggctgcttttaggaggtagcagactaactattggctccaactttacccagagagac
gtagacaaactggaggtaacctacaaacatgatgggggggcgtcgcagattgaccgattc
gcctttaccgccgctgacagcaccaaacggggtatgctgctggatgggcagctatacacg
gaacctgtgttcttcacaatccagatcaagcctttggataggtcatgtccagaggtggtg
aagctgcttcctctttggcaagcagagcctcttggagacggtcgacacgggatcttgatt
tcatctcgagagctgaaggcccaagacagcaatagcaaagaagaggagctgatattctgc
attgttcgacagccctactttggttacctagaacacatgactacaggtggttttgtatca
cagcgcttcactcagatggagctgcacaggagaactattgcctacatcatcaacccagat
gggaagtctctctcagacagcctggagttcacagtgtctgaccctctaggcaacacgggg
ccctctcacctacttgagttcagctggtccagcgtggagctgtctcagcccgagtactct
gtgtgtgaggagcagggagccttctcgcttgacatcatccgaagaggaaacctagcagag
tcttcatatgtcactattaaggtgaaggaagggactgcatcagctggaaaagactttgtc
actagctattcttccctcattcagtttggtccaggagtgtcaaagcgcagttggcaaatc
cagctaattcaggatcaccttgaggaagctgtggaaatgtttgaagtgctgctggtctcc
cctgaaggcacagtgatcggcagcatcgacaaggctccggtcaccatcagggactcagga
agcggacagactaagctgaaccaagatcaggcaaaagaggtttggtcagacacgtaccca
caacatggctccattcagctagagaagctgccccttggcaccgaatcagtgatctggagt
cgtggagactccaggcttggagcacatgtccccaaaaataaacttaaagttttgggaaac
ccaaagtctattccaccttcatcagtttttcacaatgaaacagatattgtttacacgtat
aacggaatcatgcaaatgcaagtagaggacaacacctctccgttgaggaaggaaagaaag
gcaaacatccgtgtggttagcaggggagcacaacagcaggggccagctgtgcttaccaag
tcaaagtcagggcatcacagaaacatctcaacaaatccagaaaaaatagcactggctaaa
gggcatgctgaagccaactccataccaaagccctgtgtaccacaactgatgggactcctg
catttccaccagaccaccaatcagctatttcactgcgacggtgtctcctggaagccctgg
gccccaactgatgagatggtgagtgctcagatgtgtcctcggggctggacctttcatggt
ggctactgtcacttcctcagcactgaacaaaaggttgcatggagcacagctaacagggtc
tgcagagagagatacaaaggcacattagtaagcgttctttctaaagtcaaaatggattgg
ctttgggactttagtgaaagaaaaccgttttggataggcctcaatgacagggatggcaga
ggacgctgggaatgggcgggtggtgagccagtcagctacactaactggagaaagacaccc
tcccattccaagaggaagggaaacaaaaggtgtgtcctggtgtggagaaaggcaaagtgg
caagtcagggactgcaagacgagtacagctcatcgctttgtgtgttcaataaaaacttga
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integrated database retrieval system
