KEGG   Pungitius pungitius (ninespine stickleback): 119223537
Entry
119223537         CDS       T07626                                 
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
  KO
K19719  collagen type II alpha
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510  Focal adhesion
ppug04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    119223537 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    119223537 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ppug00536]
    119223537 (col2a1a)
Glycosaminoglycan binding proteins [BR:ppug00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   119223537 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI SNARE
Other DBs
NCBI-GeneID: 119223537
NCBI-ProteinID: XP_062418761
LinkDB
Position
1:complement(17866745..17885353)
AA seq 1418 aa
MFGFVDSRTVLLLVASQAVLLSVVRCQDEDDQAFGAKGQKGEPGEIADVVGPMGPRGPMG
PSGEQGVRGEAGAKGDKGNVGPRGRDGEPGIPGNPGPAGPPGPPGLGGNFAAQMAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGETGEPGPSGAIGPRGPPGPSG
KPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGENGAAGAKG
ESGSSGENGAPGPMGPRGLPGERGRSGAVGSAGARGNDGLPGPAGPPGPVGPAGAPGFPG
SPGSKGEAGPTGARGSEGAQGPRGEAGTPGSPGPSGASGNPGTDGIPGAKGSAGASGIAG
APGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLGATGPSGEEG
KRGPRGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGERGVPGAVGPKGVVGDPG
RTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEAGKTGEKGLVGRPGLRGLAGKDGETGPSGPSGPPGLAGERGEQGQPGPSGFQGLPG
PPGSPGEAGKPGDQGISGEGGAPGAVGPRGERGFPGERGGAGAQGLQGPRGLPGTPGSDG
PKGAIGPTGGAGSQGPPGLQGMPGERGTSGITGAKGDRGDNGQKGPEGAPGKDGSRGLTG
PIGPPGPSGPNGAKGETGITGPTGATGVRGAPGDRGEIGPPGPAGFAGPPGSDGQPGAKG
ELGESGQKGEGGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPGAAGRVGSPG
PNGNPGSAGPAGPSGKDGPKGARGDAGLPGRQGDSGLRGPPGLQGEKGEAGKDGLPGPDG
PSGPQGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGASGSTGDRGPPGPVGPPGLTG
PSGDTGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGSTGPVGPLGKQGDRG
ESGAQGPAGPSGPSGARGMAGPQGPRGDKGESGEVGERGQKGHRGFTGLQGLPGPPGSSG
DSGAAGPPGPSGPKGPAGTPGPAGKDGSNGQLGPIGPPGPRGRSGESGPSGPPGNAGPPG
PPGPPGPGIDMSAFAGLGQTEKSSDPLRYMRADEASSSLRQHDVEVDSSLKTLNSQIENL
RSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGSIADAIKVFCNMESGETCVSPSIA
EVPKKNWWTSKGKDRKHVWFGETMNGGFHFNYAEDGPVANAASVQLTFLRLLSTEASQNL
TYHCKNSVAYMDQATGNLKKALKLQGSNDVELRAEGTSRFTYTVLEDGCKKHTDRWGKTV
FEYKTQKTTRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq 4257 nt   +upstreamnt  +downstreamnt
atgttcggctttgtggattcaaggactgttctgctactagtagcatctcaagccgtctta
ctctccgtggtcagatgtcaagatgaggacgaccaggcatttggtgctaagggacagaaa
ggtgaaccaggagagattgccgatgttgtaggaccaatgggcccgcggggccctatgggc
ccatcaggtgagcagggagtacgtggagaagccggcgcaaagggcgacaagggaaatgtg
gggcctcgaggaagagatggtgagcccggcatccccggaaaccccggacccgccggaccc
cctggaccaccaggcctgggagggaacttcgctgctcagatggccggaggatttgatgag
aaggccggaggcgctcagatgggagtgatgcaggggccgatgggtcccatgggtcctcgt
ggcccccccggacccagtggcgctcctggcccacaaggattccaaggtggacctggagag
acaggagaacccggtccttctggagcgattggaccacgtggaccacctggaccttctgga
aaacctggaagtgatggagacgctgggaaacctggaaaagctggtgagcgtggacctgca
gggcctcagggagctcgtggattcccaggaactcctggacttcctggaatcaaaggacac
agaggtcaccctggtctggatggagctaagggagagaacggtgccgcgggagccaagggt
gagtctgggtcctctggagagaacggcgcgcccgggcccatgggtccacgtggtctgccc
ggcgagaggggacgttctggagcagtcggatctgcaggtgcacgtggaaatgatggcttg
cccggtcctgctggtccccctgggcctgttggtcctgctggtgctcccggtttcccagga
tctccaggatccaagggagaagctggtcctactggagcccgtggatctgaaggagcacag
ggtcctcgcggagaggccggtaccccaggatcccctggaccctccggagcatcgggtaac
cctggtactgatggtatacccggagctaaaggatctgctggtgcttctggtattgctggt
gctcctggattccccgggccccgtggcccacctggaccacagggagccacaggacctctg
gggccaaagggacagtctggagaccctggtcttcctggattcaaaggtgaagccggaccc
aagggagagctaggccccatcggtcctctcggtgccactggtccttctggtgaggaagga
aagagaggccccagaggagagcctggaaccgccggacccctcggacctccaggagagagg
ggagctcctggtaaccgtggtttcccaggtcaggacggtcttgctggtgctaagggtgcc
cctggtgaacgtggtgttcctggtgccgtgggacccaaaggtgttgttggagatcccggc
cgcacaggagagtccggcctccccggagccagaggtctcacaggtcgtcctggagatgct
ggtcctcaaggcaaagttggaccttctggagcttctggtgaggacggtcgccccggcccg
ccgggccctcagggagcccgtggacagccaggagtgatgggattccctggaccaaaggga
gccaatggtgaagctggaaagacaggagagaaaggtcttgtgggtcgtcctggtctgaga
ggtcttgctggaaaagatggtgagactggtccttctggacccagtggccctcctgggctt
gctggagagagaggagagcaaggacagcctggaccttctggcttccagggtctgcctgga
ccacctggttccccaggagaggctggaaagcctggtgaccagggaatttctggtgaggga
ggagctcctggtgctgttggacccagaggtgagcgtggcttcccgggtgagaggggtggt
gctggagctcagggcctccagggacctcgtggacttcctggaacaccaggatctgatgga
cccaagggagccatcggacctactggtggtgctggatcccagggtccccccggcctgcag
ggtatgcccggagagagaggaacgagtgggatcacaggagccaagggagacagaggagac
aacggacagaagggccccgagggagcccctggaaaagacggcagcagaggtttgaccggt
cccatcggtcctcccggcccatctggacccaacggagccaagggtgaaactggaattact
ggccctactggtgccactggtgtccgaggtgctcctggtgaccgtggtgagatcggtcct
cctgggcctgccggctttgctggacctcctggttcagatggtcagcccggtgctaaggga
gagcttggtgagtctggacagaagggagaaggtggttctcctggacctcagggaccatct
ggggcccctggacctgtgggacctactggtgtatctggacctaaaggagcacgtggtgct
cagggtgctcctggtgccactggtttccctggcgccgctggcagagttggatctcctggt
cctaatggtaatcctggttctgccggccctgctggcccatccggtaaagacggaccaaaa
ggtgctcgtggtgatgccggcctcccgggtagacagggagacagtggtctccgtggacct
cctggccttcaaggagagaagggagaggctggaaaggatggactgcctggtcccgacggg
ccttcaggtcctcagggtctaggtggatctcgtggtattgttggtttgcctggtcagcga
ggagagagaggtttcgctggtctccctggaccttctggtgagcctggtaaacaaggagct
tctggctctactggcgaccgcggacctcctggacctgttggacctcctggacttactggg
ccttctggagacactggaagagagggtacccctggatcagatggacctcctggtagagac
ggagctgctggagtcaagggagagcgaggtaacaccggtcccgccggcgcccctggagct
cccggcgctcccggttccaccggacccgtcggcccactcggcaagcagggagacagagga
gagagcggcgctcaaggacccgccgggccatctggacccagcggcgccagagggatggct
ggaccccaagggccacgcggggacaagggagagagcggcgaggtcggagagaggggacag
aagggtcaccgtggcttcaccggtctgcagggtcttcctggacctcccggttcctctgga
gattctggagctgctggacctcccggaccaagcggacctaagggaccagctggaacaccc
ggacccgctggcaaggacggatctaacggacagctgggtcctattggacctcccggacct
cgtggacgttctggagaaagtggtccttctggtcctcctggtaacgccggaccccctggc
ccacctggtcctcctggcccgggcattgacatgtcggccttcgccggcctgggtcagacc
gagaagtcctccgatcctctcaggtacatgagggccgacgaggcctccagctccctgagg
cagcacgacgtggaggtggattcctcgctgaagacgctcaacagccagatagagaacttg
cgcagccccgacggctcccagaagaaccccgctcgcacctgcagggacctgaagctgtgc
caccctgagtggaagagcggcaactactgggtcgatcccaacatcggcagcatagccgac
gccatcaaggtcttctgcaacatggagagcggagagacctgcgtgtccccgagcatcgcc
gaggtgccgaagaagaactggtggacgagcaagggcaaggaccgcaaacacgtctggttc
ggagagaccatgaacggaggattccatttcaactacgccgaggacggccccgtcgccaac
gccgccagcgtccagctgaccttcctgaggctcctgtccaccgaggcgtcccagaacctc
acctaccactgcaagaacagcgtggcctacatggaccaggcaacgggcaacctgaagaag
gccctgaagctgcagggctccaacgacgtggagctccgcgccgagggcaccagccgcttc
acatacaccgtgttggaggacggctgcaagaaacatacggaccggtggggcaagaccgtc
tttgagtacaaaacacagaagaccacccgtctgccaatcgtggacattgctcccatggac
atcggaggagcggatcaggagttcggagtcgaagtgggcgcggtctgcttcttgtaa

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