Pungitius pungitius (ninespine stickleback): 119223665
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Entry
119223665 CDS
T07626
Symbol
smfn
Name
(RefSeq) small fragment nuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119223665 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119223665 (smfn)
03009 Ribosome biogenesis [BR:
ppug03009
]
119223665 (smfn)
Messenger RNA biogenesis [BR:
ppug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
119223665 (smfn)
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Pre-60S particles
RNases
119223665 (smfn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
119223665
NCBI-ProteinID:
XP_037336945
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All DBs
Position
1:12760811..12767619
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AA seq
226 aa
AA seq
DB search
MLWRNVYRVINTFTFRFSSKVDVQVFRQINMLSVAVSQRMVWVDLEMTGLDIEKDQIIEM
ACIVTDSDLNILAEGPNLIINQPKKLLDGMSEWCKEHHGKSGLTQAVQDSNITLEQAQYE
FLSFIRQHTPAGQCPLAGNSVHADKRFLDKYMPQFMDHLHYRIVDVSTIKELCRRWFPEE
FKMVPHKKAAHRALDDIHESIKELQYYRANVFKASEDQKQKIVEQH
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgttatggcgaaacgtttaccgtgtaattaacacattcactttcagattcagttcaaaa
gttgacgttcaagtgttccggcaaatcaacatgttgtccgtcgcagtatctcagagaatg
gtttgggtcgacctggagatgacaggtttggacattgagaaggaccagatcattgagatg
gcctgcattgtcactgactccgacttgaatattctggctgagggtcccaacttgattatt
aaccagccaaaaaagctgcttgacgggatgtcagaatggtgtaaagagcaccatgggaag
tcaggactgacgcaggctgtacaggacagtaacatcaccctggagcaggcacagtacgag
ttcctgtcttttatcagacagcacaccccagctggacagtgtccccttgccggaaactct
gtgcatgctgacaagaggttcctggacaagtacatgccccagtttatggatcatcttcac
taccgaattgttgatgtcagcaccattaaggaactttgcaggcggtggtttccagaggaa
ttcaaaatggtgcctcacaagaaagcagcccacagggccttggatgacatccacgagagc
atcaaagagctacagtactacagagccaacgtcttcaaagcctcagaggaccagaagcaa
aagattgtagaacagcattaa
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