Pungitius pungitius (ninespine stickleback): 119224501
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Entry
119224501 CDS
T07626
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04142
Lysosome
ppug04144
Endocytosis
ppug05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119224501 (cltcl1)
04142 Lysosome
119224501 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
119224501 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119224501 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119224501 (cltcl1)
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
119224501 (cltcl1)
Exosome [BR:
ppug04147
]
Exosomal proteins
Proteins found in most exosomes
119224501 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
capSnatchArena
LVIVD
Gp18_dom_I
Motif
Other DBs
NCBI-GeneID:
119224501
NCBI-ProteinID:
XP_037337393
LinkDB
All DBs
Position
5:complement(7073481..7102366)
Genome browser
AA seq
1684 aa
AA seq
DB search
MAQILPIRFQEHLQLQNMGVNPANIGFSYLTMESDKFICIREKVGDQNQVVIVDMSDPTN
PIRRPISADSAIMNPTSKVIALKAAKTLQIFNIEMKSKVKAHTMTEEVMFWKWISVNTVA
LVTDTAVFHWSMEGDSQPAKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNLKASTLFCFAVRSQAGGKLHIIEVGQPAAGN
QPFAKKAVDVFFPPEAQTDFPVAMQIGNKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHEATSGIIGVNKKGQVLSVCVEEENLVNYATNVLQNPDLALRMAVRSNLAGA
EEIFARKFNTLFAQGSYSEATKVAASAPKGVLRTAETIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVYL
RANIPNKVIQCFAETSQFQKIVLYAKKVGYTPDWVFLLRNVMRVNPDQGLQFAQMLVQDE
EPLANINQIVDVFMEGNLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLMHAPQVADAIL
GNQMFTHYDRPHVAQLCEKAGLLQRALEHYTDQYDIKRAVVHTHLLNPEWLVNYFGSLSV
EDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTQLLVELFESFKSYEGLFYFLGSIVN
FSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVEQVEKRNRLKLLLSWLESRIHDGCEEPATHNALAKIYIDSNNTPERFLKENAFY
NSAVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWVNVL
DENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQRDLVKEAIDSYIKAVDPSAYMEV
VNAASKNDNWEDLVKFLQMSRKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQQ
VGDRCYEEGMHEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFAC
VDGEEFRLAQICGLHIVIHADELEDLISYYQDRGYFEELIALLESALGLERAHMGMFTEL
AILYSKFKPQRMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEFDNAAITMMS
HATDAWREGSFKDIIAKVANVELYYKSLSFYLEFKPLLLNDLLTILSPRLDHTRAVTFFS
KVNQLKVVKPYLKSVQNHNNKSVNEALNNLLTEEEDYQGLRASIDAYDNFDTIDLAQRLE
KHQLIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFLEQ
GRKECFAACLFASYDLLHPDVVLELAWRHNIVDFAMPYFIQVMREYLTKVDEFAAKVTVD
KLDEADSQRKTEEEVIEPQPIVFGQQLMLPPSPVPTPPQPGYPGYGYPVAPAGFPAQPVY
GFNM
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagttgcagaacatgggcgtg
aacccggccaacatcgggttcagctatctgaccatggagtcggacaagttcatctgcatc
agggagaaggtgggcgatcagaaccaggtggtgatcgtggacatgtccgaccccaccaac
cccatcaggaggcccatctctgccgacagtgccatcatgaaccccaccagcaaggtcatc
gccctaaaagccgccaagacgctacagattttcaacattgagatgaagagcaaggtaaag
gcgcacaccatgacggaggaggtcatgttctggaagtggatctctgtgaacaccgttgcc
ctggtgacggacacggcagtctttcactggagcatggagggggattcccagcccgccaaa
gtatttgatcggcacgccagtctggcagggtgtcagatcatcaattacagaactgacgag
caacagaagtggctgctgctgatagggatttctgcacagcaaaacagagtggttggcgcc
atgcagctgtattctgttgacaggaaagtgtctcagcctattgagggtcatgccgctgcc
ttcggggagttcaaagtggagggaaatctcaaagcctcaactctcttctgctttgctgta
cgctcacaggctgggggaaagttgcacatcattgaagttggtcagccagctgcaggaaac
cagccatttgctaagaaagcagtggatgtgttcttccccccagaggcccagacagacttt
cctgtagctatgcagattggcaataaacatggcgtcatatatttgatcacaaagtatggc
tacattcacctgtacgacttggagtctggagtatgcatctacatgaaccggatcagtgca
gagaccatctttgtcaccgcccctcacgaagccacgtcgggcattattggagtcaacaag
aagggacaagtgctgtctgtgtgtgttgaggaggaaaaccttgtcaactatgccaccaat
gttctgcagaaccccgatctggccttgaggatggctgtgaggtccaacttggctggggct
gaggagatttttgccagaaagttcaacaccttgtttgctcaggggagttattcagaggcc
actaaggtggctgcgtcggcacccaagggtgttctgcggacagcagagaccatccggaag
ttccagagcgtcccagcccaaccgggccaggcctcaccgctcctgcagtactttgggatt
ctgctggaccagggccagctcaacaagtttgagtccctggagctgtgccggccggtcctg
cagcaggggcgcaagcaacttctggagaaatggctaaaggaggacaagctggagtgctct
gaggagctgggggacctggtgaaggcctcggaccccaccctggctcttagtgtgtacctc
agagctaacatccccaacaaggttatccagtgctttgccgagaccagccagttccagaag
attgtgctatatgctaaaaaggtgggctacaccccagactgggtgtttttactgaggaac
gtgatgcgcgtcaacccggatcagggacttcagtttgcccagatgctggtgcaggatgag
gagccgctggccaacatcaaccagatcgtcgatgtgttcatggagggaaacctgatccag
cagtgcacatcttttctgttggatgctctgaagaataaccgcccggctgagggccacctg
cagacgcgtctactagagatgaacctcatgcatgctccccaggtagcagacgctatcctg
ggcaaccagatgttcacccattatgaccggccccatgttgcccagctgtgtgagaaggca
gggctactacagagagctctggagcactacaccgaccagtacgacatcaagcgggctgtg
gtgcacacacatctgctcaacccggagtggctggtgaactactttggctctttatcagtg
gaggactcgctggagtgtttgagggccatgttgtcggccaacatcaggcagaacctgcag
ctgtgcgtccaggttgcgtcgaagtatcacgagcagctggggactcagttgctggtggag
ctctttgagtccttcaagagctacgagggcttgttttacttccttgggtcgattgtgaat
ttcagccaggagccggacgtccacttcaagtacatccaggccgcctgtaaaacaggccag
attaaggaagtggaaaggatctgcagggagagcaactgctacgaccctgaaagggtgaaa
aacttcctcaaggaggccaagctaacagaccagcttcccctaatcattgtgtgtgatcgc
ttcgacttcgtccatgacctggtgctctacctctaccgtaacaacctccagaaatacatt
gaaatctacgtacagaaagtgaaccccagtcgcctccccgtggtaataggcggccttttg
gatgtggactgtgctgaggacgtcataaaaaacctgatcatggtggtcagagggcagttc
tccactgacgagctggtggagcaggtggagaagaggaacaggttaaagcttctactgtcg
tggctggagtcccgaatccacgatggctgcgaggagccggccactcacaacgccctcgcc
aaaatatacatagacagcaacaacacacccgagcgcttcctgaaggagaacgcgttctac
aacagcgccgtggtggggaagtactgcgaaaagagggacccccacttggcctgcgtggcc
tacgagagaggacagtgtgacctggatctcatcaaagtgtgcaatgagaactctttattc
aagagtgaggctcgctatctggtgcgaaggaaagatccagagctttgggtgaacgtcttg
gatgaaaacaaccccttcagaaggcaactcatcgaccaggtggtgcagacggcgctgtct
gagacccaggatccagaggaggtgtcggtcacggtgaaggccttcatgaccgcggacttg
cccaacgagctaatcgagttgctggagaagattgtactcgacaactctgtcttcagcgaa
caccggaacctccagaacctgctcattttgacggccatcaaggctgaccgcactcgtgtg
atggagtacatcaacagactggacaactatgacgccccggacatcgctaacatcgccatc
agcaacgagctctttgaggaagcctttgccattttcaagaagtttgacgtcaacacctca
gccatacaggtattaatagagcacatagggaacttggaccgggcctatgagttcgcagag
cgctgcaacgagcctgctgtgtggagccagctggctcgagctcagctgcagagagacctg
gttaaggaggccatagactcgtacatcaaggccgtcgacccctcggcgtacatggaggtg
gtcaacgctgccagcaagaacgataactgggaggacttggtcaaattcctccagatgtct
cggaagaaagcaagggagtcatatgtggagacggaactgatcttcgctttggccaaaacc
aaccgtctggccgagttggaggagtttgtcagcgggcccaataacgctcacatacagcag
gtcggtgatcggtgttacgaagaggggatgcacgaggcggccaagctcttgtacaacaac
gtgtccaactttgcccgcctggcatcgacgctggtccacctcggggagtaccaggcggcc
gtggacagcgcccggaaagccaacagcacgcggacgtggaaggaggtgtgttttgcgtgc
gtggacggggaggagtttcggctggcccagatatgcggtctccacatagttatccacgcc
gacgagctggaggacctgataagctactatcaggaccgtgggtactttgaggagctcatc
gccctgctggagtccgcgctgggtctggagcgggcccacatgggcatgttcaccgagctc
gccatcttgtattcaaagttcaaaccacagaggatgagggagcacctggagctgttctgg
tccagagtcaacatccccaaggtcctccgtgcagcagagcagtctcatttatgggcagaa
ctggttttcctttatgataaatatgaggagtttgacaacgccgccatcacaatgatgtct
catgccacagatgcatggagagaaggatcgttcaaggacatcattgccaaggtcgccaat
gtggagttgtactacaaatctctgtccttctacctggaattcaaacctcttttacttaac
gacctgctgaccatcctgtccccgcggctggaccatacgcgagcggtcaccttcttcagc
aaggtgaaccagctgaaggtggtcaagccttacctgaagtccgtccagaatcacaacaac
aagtcggtcaacgaggcccttaacaacctgctgacggaggaggaggactaccagggcctt
agagcgtccattgatgcctacgacaactttgacaccatcgacctggcgcagcggttggag
aaacaccagctgattgagttcaggcgcatcgccgcttacctttacaagggcaacaaccgc
tggagacagagcgtggagctctgcaagaaggacaagctctacaaggatgccatgctctac
gccgcggagtctaaggacgctgagctggcagagacgctgctccagtggttcctggagcag
ggcaggaaggagtgcttcgccgcctgcctgtttgcctcctatgacctgctgcacccggat
gtggtgctagagctggcctggaggcacaacattgtggactttgccatgccctatttcatc
caggtcatgagagagtacctgaccaaggttgatgagtttgcagcgaaggtgacggtggac
aaactggacgaggcagacagccaaaggaaaaccgaagaggaagtgatagagcctcagccg
atagtgttcggtcagcagctgatgttgcccccctcacctgttccgactcctccccaacca
gggtaccccggctacggctaccctgtcgctcccgccgggttcccggctcagcccgtctac
ggcttcaacatgtaa
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integrated database retrieval system
