Pungitius pungitius (ninespine stickleback): 119224549
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Entry
119224549 CDS
T07626
Symbol
tmc1
Name
(RefSeq) transmembrane channel-like protein 1 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppug02000
]
119224549 (tmc1)
03037 Cilium and associated proteins [BR:
ppug03037
]
119224549 (tmc1)
Transporters [BR:
ppug02000
]
Other transporters
Pores ion channels [TC:
1
]
119224549 (tmc1)
Cilium and associated proteins [BR:
ppug03037
]
Other cilia and associated proteins
Stereociliary proteins
119224549 (tmc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Piezo_TM1-24
Na_K-ATPase
Motif
Other DBs
NCBI-GeneID:
119224549
NCBI-ProteinID:
XP_062418390
LinkDB
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Position
5:15846413..15854827
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AA seq
955 aa
AA seq
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MGRRKRGNERRKGTSRAEEGDSQTRPERIDRGRRKRRRSHQDTKGREGDEELPPKIQSGR
AAKTRKHTKNEKTRKEEEEEEKKAEKSEGKERHGKRKKTHGSANKKDKEEDGGKHTMKEK
AQEVKRKKHKRVVETSPQPSEEEDLDEEVNEEEEVRPECLSSEELEKLKEAVDERKKLIQ
ALRGKPWPIKKKRVTLRESQEFVEKYEGALGKGKGRKLYAYKVLMSKKWMKFQRDFENFK
TTCIPWEMKIKEIESHFGSSVASYFIFLRWMYGINMILFCLTFGLVMVPEALMGRPYGTI
PRKTVPRAEATSAMDFAVLWDFGGYAQYSVLFYGYYNNQRAVGWLKFRMPLSYFLVGVGT
VAYSYMVVIRTMARNANESGVGDDNSFNFTWRMFTSWDYLIGNPETADNKFASITTSFKV
SVAGRVQWPMPCTPHPSVSGVLLPPQEAILEEQESQKDDNIHLTRFLRVLANFLVLCCLA
GSGYLIYFVVRRSQKFALDGLENHTWWERNEVNMVMSLLGMFCPMLFDVISALENYHPRV
ALQWQLGRIFALFLGNLYTFIIALMDEINLKREEENIIKFNITVWEASLYNGTVSENGTA
PPITIEPADVPRGPCWETMVGQEFVRLIISDTMTTYITLLIGDFLRAVLVRFLNYCWCWD
LEAGFPSYSEFDVSGNVLGLIFNQGMIWMGAFYAPCLPAMNVIRLHVSMYLQCWAVMCCN
VPQERVFKASGSNNFYMAMLLVILFLSTLPAIYTIVTIPPSFDCGPFSGKQRMFDVIQET
LESDFPAWFGKLFSYASNPGLVLPFILLMVLAIYYLQSTSKSYKESNMELKKKLQTQNEE
NKKKNKLAALKAQMDLEEARKGSSRKAQQQKNKNASLQVQEADEEDHRNSQRLHRSKNGR
DVSHSVREQRGQLPTSKGPVARAYRHGNQGTPGYLPSFPQQSEPRMHRVLSLQRH
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggggagaaggaaaagaggaaatgaaaggagaaaaggaacatccagagcagaggaaggg
gattcacagaccaggcctgagaggatagataggggaaggaggaagagaagaaggagtcat
caagatacaaaagggagagagggggatgaggagttgccccccaaaatacaaagtggcagg
gctgcaaaaacaagaaagcacacaaaaaatgaaaaaacaagaaaagaagaggaggaagag
gagaagaaggctgagaagagtgaaggcaaagaaagacatggcaagagaaaaaagacacat
gggagtgctaataaaaaagataaagaagaggatggaggtaaacatacaatgaaggagaag
gcacaggaagtgaagagaaaaaagcacaagcgagttgttgaaacaagtccacagccaagt
gaggaggaagaccttgatgaagaggtcaatgaggaagaagaggtgagaccagagtgtctc
tcatcggaggagctggagaaattgaaggaggccgtggacgagaggaagaaactgatccaa
gctctcaggggaaagccgtggcccattaaaaagaaacgtgtgacattaagggaatctcag
gagtttgtggaaaaatatgagggagctttaggaaaagggaaaggcaggaaactctatgca
tacaaggtcttgatgagcaagaaatggatgaagtttcaacgtgactttgaaaacttcaaa
actacctgcattccctgggagatgaaaatcaaggagattgaaagtcattttggctcctca
gttgcctcttacttcatctttctgcggtggatgtatggcatcaatatgatcttgttttgt
ctgacctttggtctagttatggtgccagaggcattgatggggagaccgtatggcaccatc
ccaagaaagactgtcccccgagccgaggcaaccagtgccatggactttgctgtcttatgg
gactttggaggttacgctcagtattcggtcctcttctacggttactacaacaaccagcga
gccgtcggctggctcaagttccgcatgcctctgtcatacttcctggtcggcgtgggaaca
gtggcctacagctatatggtggttataagaacgatggcccgtaacgcaaacgagtcaggg
gtcggagacgataacagctttaatttcacctggcgaatgttcaccagttgggactacttg
ataggaaaccctgaaactgcggacaataagtttgcctccatcaccaccagtttcaaggtc
agtgtagctggtagagtacagtggccgatgccttgtacgccacatccatctgtatccggt
gtccttctacccccgcaggaggcaattttagaggagcaggagagccaaaaggacgacaac
atccatttgactcgtttcctgcgtgtgctggccaacttcttggtcttgtgctgcttagcg
ggaagtggatacctcatctactttgtagtgcgccgctctcagaagtttgccctcgacggt
ctggaaaatcacacctggtgggaaaggaacgaggtgaacatggtcatgtcactactgggg
atgttctgcccaatgctgtttgacgtcatcagcgccctggagaactaccacccccgtgtc
gccctgcagtggcagctgggtcgcatctttgccctcttcttgggtaatctctacaccttc
atcattgcgcttatggatgagatcaacctcaaaagggaagaggaaaatatcattaagttc
aatataaccgtctgggaagccagtctttacaatggcacagtgtcagaaaacggcacggct
ccacccatcactatcgagcccgccgatgtgccccgagggccctgctgggagaccatggtg
ggccaggagtttgttcggctcatcatatctgataccatgacgacctatatcacgctgctg
atcggtgacttcctgagagccgtgcttgtccgtttcctcaactactgctggtgttgggat
ctcgaggctggatttccttcctactctgagtttgatgtcagtgggaacgtactgggccta
atcttcaatcaaggaatgatatggatgggtgctttctacgccccctgcctacccgccatg
aatgtcatacggctccacgtgtccatgtacctgcagtgctgggccgtgatgtgctgcaat
gtgccccaggaaagggtcttcaaggcctctggctcgaacaacttctatatggccatgttg
ctggtcatcctcttcctttccactctgcctgccatctacaccatcgtcaccatcccccct
tcttttgactgcggacccttcagtgggaaacaacgtatgtttgatgtgatccaggagact
cttgagtcagacttccctgcctggtttggcaaactgttcagctacgcctctaaccctgga
ctggtgctgcccttcatactgcttatggtattggccatttactacttgcaatccacatcc
aaaagttacaaagaatctaatatggaactgaagaaaaaactccaaacgcaaaatgaggag
aacaagaagaagaacaaactagcagcactgaaggcacaaatggatctagaagaggccaga
aaaggttcatctcgaaaagctcaacaacaaaaaaacaaaaatgcttcactgcaagtccaa
gaggcagatgaagaagaccacagaaacagtcagaggctacatcgtagtaaaaatggacgc
gacgtttctcattcagttagagaacaaagaggccaactcccaacctccaaaggccctgtc
gccagggcctatcgacatggtaaccaggggactcctgggtatctgcccagtttccctcag
caaagtgaaccgaggatgcacagagtgctgagtctgcagagacactga
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