Pungitius pungitius (ninespine stickleback): 119224616
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Entry
119224616 CDS
T07626
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119224616 (vps13a)
Membrane trafficking [BR:
ppug04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
119224616 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Motif
Other DBs
NCBI-GeneID:
119224616
NCBI-ProteinID:
XP_037337641
LinkDB
All DBs
Position
5:483090..512095
Genome browser
AA seq
3276 aa
AA seq
DB search
MVFESVVIDVLNRFIGDYVVNLDSSQLKLGIWAGDAVLKNLEIKENALSQLDIPFKVRAG
HIGQLQLKIPWKNLYNQSVEAKLDGVYLLVVPTASIKYDAVKEEKQLQEARQRELQRIEE
TKLKAAEKEDPNLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPKCPLSFGVSLK
NLSLQTSDENWNPRLLDEHSRLFFKLVQLENLFAYWNVNSVLFSNHSADEALQCLQKSMG
TGNSFSVSHDFIFRPISARAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPEVGVNKNARIWWKYVITGILEVDVKPCLHMWSWKSIRSHRR
MVKCYKELYKTKITSKKPSPELLKALEEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
LKMEEEESEGWLSWMWSWGGQADAATKDVKSGVFNELLTPAEKSKLYTAIGYSEATANPN
LPKDFEDMKVNFHMERLSISIKDNKDRNEIIRLTVGELKSTLTQRAGAQAIKLTAQLSLF
EVTGLASDRPAPTVLSSKKAATGAGTPLLCILFETNPLNESANQRLHVESQPLEIIYDAI
TVNSMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLMASYV
IIPQTGFYNGTQNILLLDLGHFKMSSKSQEHLPQLSAYSSNIEDIMSRAYDSFDIQLSSL
QFLYSKPDGNWKMARKQRQSPLHILEPVDLKMVFSRAMVSKDLRMAKYKMSGELPLLSMR
ISDVKLRNVLQLVESIPLPESRSDARTNASSSTPKTKQSFTPQLTPRSHRKLADQRSSLF
FESCETISITSLGSEEDLFFDAPSSPIGNQPFFPDNPMPLSYKRKVSETPKNMTEFIMTF
EISEFSVQLCRLSGDQEVTVLHLDIEGLGTELKIRTFDMTSNTYLREICLKCPEYMDSEK
KQVQLITTLDNTEVDLLTLEYIKADKNGPEFKSQHNNTEELIKVTFSSLDVHLHTEALLN
TMNFLNNLLPASTKKEGAPEELPAIPEEDEAEAEREGEKKEEAAVSRKKSTKNSKFANVI
NRHIRADLRSLKVFIRGQKARISEIRIEGLVSEVLMRKKEMEVQANLKNIVILDCDKDAV
YKKAVSIADKEVFAFRMVNYTNATEGDAYLDMSKVDTSVMLTVGCIQVIFLNKFVSSILA
FINNFQEAKEALTVVTVQAAEKAASGVKELAERSTRIALNVHFNAPVIFLPQSYSSSNVI
VADLGLLSVKNCFAKQPSISDAKIPPVVDRIIIKLTDLKMYRTTFVGEGFQGETQLLMPV
SLHLEIQRNLSFNWYHSIPDIEITAHLKPISLILSQDDMIVVLRTLSENLSEQSDALPPP
APPPTTDLSSDSASLKESQGSGTTGPASSNTVVIAAVVEPQKSIKLKSKLKLDFKFDSMT
LVLYSPNVNQTQLLDSHNELLKLAEFTMGTISTSVHMFSDDTMKASVRLAVCLLDDKRPQ
IKMVTPRMIAMRPGAEQNMMVEVNYRQGRDGTTLDTVVQDVYLCASMEFLLTVVEIFRMA
TQQGFDQKPQPKSSAGAGEKKNINSSTTSKESTVAPAVVSKTEMNVVVRNPEIVFVADLT
RADAPALVMTTQCELLMKSDAEGSQMTAVIKDLKVVACPFLREKREKNVTTVLQPCQVFF
KSAQSPTSPQAMEVSINALTLKVSPIIINTVMTIQSALTTWSTPKETPKALDSPVPVDLW
EKRSWKDLKFWFLEEEGDEIQEAAAPLVPQGESLQVTIRSVCLTLEAGVGHRTIPMLLAK
SSFHGDVTNWSTLINLHSELNLEVNYYNEIMGVWEPLLEPLEDEKTDGFRSWRLELKMKK
KPVKYTNLSDEVDYYVPDYKTIIVISSKDQLNITLTKSGLVMLGNLGTAFAEAAKQTADS
FQKDEAPFVVKNRLGLPVSFRHSEMFCPISEQSTNGTVKMQDGETIGMDYSTKADSDQFS
AMISLSGKDYYIEPTPMGHTSAGVIPLIKVGGGMYNVMHNDSRVTRFLVCQIYSVEGSKY
IKIRSPFQIINHFSIPFKVLEGSTCLGTALPTEEFCVPLDSYRSELSLQPVTEDDAEDQA
EQFECSEGFSYEEFSNLQPQTCLNQSCRRRGDQGGVMMVNMVPLRDAVTFKHSGGVGDNF
DVPFVLHLWPSILLRNLLPYPISYKLKDSGASAPEATLNPGHSAQLHTAVINQSRLELRL
LNYLAQDWSSEYSFHSDKEEITFIVFQSLGENDEDECDGTGMKKAELDIAVHVKYDLGQT
VVAIHSPYWMVNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPHYFLKNNKVRLMISDSE
LSDDFSLDTVGSHGDVKCKGHVKDYLVGVKIDSSSFSLTRIVTFVPFYMLVNRTKHSVFV
CEVGQSNWTEARPEQSAIPFWPENDTKQLRIKVEGCLSPPRIIDFTRPENCLLLHLDNSV
GGITADVNLSEHSATIRFLEYHDGAAPFLIINHTKDQTLHFHQSARRDSWWVADELLDLS
FSLEEDSSQKEAEQQEELQAGKAVHYTWNEPTGSRELCWKCGTYSGKLKTEEDLREDMNN
KGKLFVISFYEGLQRVVLFTEEQRIYKMLCESEKAQLAEQEIILSLQNVGVSLVNNISGQ
EVSFIGITSSDVVWEIKPKNKSRWKALSSKEAEMLENRFNKYIASGSVDHAIADLDKNLQ
VSFTPNGMDMRMLQPYDAPLRRHFQPGVKVEYSVSPRQHAYRVQIHRIQIQNQLPGSIFP
YVFYPVKLPKSITVDAEPKPLTDISIVTRTAGHSDISRIKYFKVLIQEMDLKVDLGFLYA
IVDLFTAENASIMSSEQEVELFEKDIEYMKTELNHASAADTSPISLYEYFHISPIKLHLS
FSLSTGGEDGLKEKRDKELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQ
LQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFV
EGMAIGVKALVGGAVGGIAGAVSRITGTMAKGVAAITMDEEYQQKRREAMNRQPRGLREG
LARGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASS
TFQGIKRAAETSQDIASLRHPRFIHEDGVIRPYKESEGFGSQLLQKIENGRFAKYRYFAH
AKVNESDFLMITKRGIFFVTEGTFGQQTCEWQYLFEEFTKDPIIVENKRLRIEAKERVKS
VFHAKEFGKIINFKDAKIAKWVLARLDDARDSLPKY
NT seq
9831 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtaattgacgtcctcaaccggtttataggggactacgttgtc
aacctcgacagctcacagctaaagcttggcatatgggcaggcgatgctgttctcaaaaat
cttgagataaaggaaaatgccttgagtcaactcgacattccttttaaagtgagagccggt
cacatcggtcaactgcagcttaagattccatggaagaacctctacaatcagtcagtagag
gctaaactggatggcgtctatctgctcgtcgtcccaacagcaagtataaaatatgatgcc
gtaaaagaggaaaagcaactgcaggaggctcgtcagagagagttacagcggatagaggag
acaaagctgaaggctgcagaaaaagaggaccccaatctggaaaaacaggacacctttgtg
gagaagctcgtcactcaggtcatcaaaaacctgcaggtcaagatctctaacatccacgta
cgctatgaagacgatgtcactaatccaaaatgtcccttgtcatttggagtatcacttaaa
aacctcagtcttcagacatctgatgaaaactggaatcccagactgttggatgagcattcc
aggcttttcttcaagttggtacaactagaaaacttgtttgcctactggaatgtaaactcc
gtactcttctccaaccacagtgcagatgaggccttgcaatgtctccagaaaagcatggga
accggcaactctttttctgtcagccatgacttcatttttcgccctatctcagcgcgtgct
aaactgcggatgaatcccaggtcagatgtggacttctcctctcccaaggtggatctaatg
gtcaatctcagtgaggttgccattgaactcaacagacctcagtacatcagcatcctggag
ctgctgggctcagtggatatgatgtctcgcaatctgccgtacaggaagtacagaccagag
gttggcgttaacaagaatgcacgcatttggtggaagtacgtgatcacaggcatcctggaa
gtggatgtgaagccctgcctccacatgtggtcgtggaagagcattcgcagtcaccgcagg
atggtaaaatgttacaaggagctctacaagaccaaaatcaccagcaagaaacccagccca
gagctgctcaaggcactagaggagcctgagaagaccttggatatttttaacatcacattg
gccagacagcaggctgaggttgaggcaagtaaggcgggcctacgcatttaccgtccaggg
ctcaagatggaggaagaggagtctgagggctggttgagctggatgtggagttggggagga
caggctgatgcagccacaaaagatgtcaagtctggagtcttcaatgagctgttaacccct
gctgagaagtccaagctctacactgctattggatacagtgaggcaactgccaatcccaac
ctgccaaaggattttgaagacatgaaggtcaacttccacatggagaggttgtctatctcc
atcaaagacaacaaagacagaaatgagatcatcaggctgactgtgggggagctcaagtcc
acactcacacagagagctggagcacaagccatcaaactcacagctcagctcagtctgttt
gaagtcaccggcctggccagtgaccggcctgcaccaaccgtcctgtcatcaaagaaggcc
gccacaggagcaggaaccccgctgctctgcatcttgtttgagaccaacccgttgaatgag
agcgctaaccaacgccttcatgtggaatcgcaacccttggaaatcatctatgatgctata
acggtgaacagcatgtcggcgttcttcatgcctcctgacgacctgcagctggatgagctc
accaacgcaaccctcatgaaactggagcagttcagagaccgcacagccaccggtttaatg
tatgtgatcgaaacacagaaagtgctcgacctgaaggtgaacctgatggcgtcctacgtc
atcattccacaaactggcttttacaatggcactcagaacatccttctgttggaccttggg
catttcaagatgtccagtaaaagccaggagcatctgcctcagctgtctgcatattccagc
aacattgaggacatcatgtccagagcatacgacagcttcgacatacaacttagcagcctg
cagttcctttatagcaaaccagatggcaactggaaaatggcccgtaagcagagacagtca
ccgctgcacattctagagccagtagatctgaaaatggttttcagcagggcgatggtcagc
aaagacttacgcatggcaaagtataagatgtcaggagagctccccttgctctctatgcgt
atttctgatgtcaaactccgaaatgtcctgcagctggtagaaagcatccccctgcctgag
agcaggtctgatgcacgcaccaatgcttcatcctccactccaaagacaaagcagtcgttc
accccacagctcactcccagaagtcaccggaagttagctgatcagcgctcctctcttttt
tttgagtcatgtgagaccatcagcatcacctcattggggtcagaggaagacttgttcttc
gatgctccaagctctcccatcggtaatcagccattcttcccagataaccctatgccgctg
agctacaaaagaaaagtttcagaaactccaaagaacatgacggaattcatcatgacgttt
gaaatcagtgagttttccgttcagttgtgtcgtctatctggggatcaggaggtaacagtg
ctccacttggacatagagggcctcggcactgagctgaagatacgcacctttgacatgaca
tcaaacacctacctacgagagatctgcctcaagtgccccgaatacatggattcggagaag
aagcaggttcagctgatcaccactctagacaacacagaagttgaccttcttaccctggag
tatattaaagctgataagaatggccctgagttcaagtctcaacacaacaacacagaggaa
ctcattaaggtgaccttttcatccctggatgtccatctccatacggaggctctacttaac
accatgaacttcctcaacaacctccttcctgcatcaactaagaaggagggggcacctgag
gagctccccgccatccccgaagaggacgaggcagaagcagagcgggagggagagaagaag
gaggaagccgccgtatccaggaaaaaaagcacaaagaattctaagtttgcaaatgtgata
aatcgtcatatcagagctgatctccgctcgctgaaggtttttattcgaggacagaaagcc
aggatctccgagattaggattgaaggtctggtgtctgaggttctgatgaggaaaaaagag
atggaggttcaggcaaacctgaagaacattgtgatcttagactgtgacaaagatgcagtt
tacaaaaaggctgtgtcaattgcagataaggaagtgtttgctttccgaatggtaaactat
acaaacgcaacagagggagatgcctatctggacatgtctaaagtggacacttctgtcatg
ctgactgtgggatgcattcaggtcatcttccttaacaagtttgtctcctccatactggca
ttcatcaataacttccaggaggccaaagaggccctgactgtggtcacagtccaggctgca
gaaaaggcagcatccggtgtgaaggagctggcagagcgcagcactcggatcgctctgaac
gtccacttcaatgcgccggtcatcttcctgccgcagtcctactcttcctccaatgtcatc
gtagctgacctcggtctgctgtcagtcaagaactgctttgctaagcagccctctataagt
gatgcaaagatcccacctgttgtggatagaatcatcataaaattgactgacctcaagatg
tacaggaccaccttcgtaggtgaaggttttcagggagagacccagctgttgatgccagtc
agcctacatttggaaatccaaagaaatctttcattcaactggtaccacagcatacccgac
atagagatcactgctcatcttaaacccatcagtctgatcctcagccaggatgacatgatc
gtggtcttgaggactcttagtgagaacctgtcagagcagtctgatgctcttccacctcca
gctcctccgcccaccactgacctctcctctgactctgcgtctcttaaagagtcccagggc
tctgggaccactggaccagccagcagtaacacagtagtgatcgctgctgttgtggagccc
cagaaaagcatcaagctgaagagcaaactcaaattagacttcaagtttgactccatgacc
ctcgtcttgtatagtccaaatgtgaatcagacccagctgttggattcccacaatgagctg
ttgaagttggcagagttcactatgggcaccatctccacctccgtccacatgttctccgac
gacaccatgaaggcctcagtccggctggctgtgtgccttctagatgacaagagaccgcaa
ataaagatggtcaccccgaggatgattgcaatgcgtcctggagcagaacagaacatgatg
gtagaggtgaactaccgtcagggccgtgacggcaccactttggacacagtggtgcaggat
gtgtacctctgtgccagcatggagttccttctcacggtggtggaaatctttcgcatggcc
acccagcagggtttcgatcagaagcctcaacccaagagcagtgctggagcgggagagaag
aagaatattaactcctccaccacatctaaagagtccactgtagctccagctgtggtgtca
aagacggagatgaatgtggtggtgcgtaacccggagattgtgtttgtggctgacttgacg
cgcgccgacgccccggccctggtgatgaccacgcagtgtgagctgttgatgaaaagcgac
gcagagggatcccaaatgactgctgtcatcaaggacctcaaggtcgtggcctgtcccttc
ctgagagagaaaagggaaaaaaatgtgaccacagtgctgcagccatgtcaggtgttcttc
aagagtgctcagtccccgacgtcccctcaggccatggaggtctccatcaatgctctcacg
ctgaaggtatctccgataatcatcaacacagtgatgaccatccagtctgcactgactacc
tggtcgacccctaaagagacgcccaaagcgttggatagtcctgttcccgtagacctctgg
gagaaacggagctggaaggacctcaaattttggttcctggaagaggagggggatgaaatc
caagaggcagcggccccactggtaccacagggagagtcattacaggtgaccatcagatct
gtctgcctcactctggaggctggagtgggacaccgaaccatccccatgcttctggccaag
tcctccttccatggagatgtcacaaactggtctacactcattaacttacacagcgagctt
aacctggaggttaactattacaacgagataatgggtgtgtgggaaccgctgctggagccc
ttagaagatgagaagaccgatggttttagatcatggagactggaactgaagatgaaaaag
aagccagtgaagtacactaatttgtcagatgaggtggattactatgtccccgactataag
accattatcgtcatcagcagtaaagaccagctcaacatcaccctcaccaagtccggcctg
gtcatgctcggtaacctcggcacggcatttgcagaggccgccaaacagaccgcagactct
ttccagaaggacgaagctccgtttgtggtgaaaaaccgcctcggcctgcccgtgtccttc
cgccacagcgagatgttttgtcccatcagcgagcagagcaccaacggcactgtgaagatg
caggatggggaaaccattgggatggactattccacaaaagcagactctgaccagttctca
gcaatgatctccttgagtggaaaggactactacatagagcctacgccaatgggccacacc
tcagccggtgtgatccccttgatcaaggtgggcggaggcatgtacaacgtcatgcacaac
gactcgcgagtgactcgtttcctggtctgtcagatttactctgtggagggaagcaagtac
atcaagatccgctctccgttccagatcatcaatcatttctccatccccttcaaagttctg
gaaggatcaacttgtctgggtacagctctccctaccgaagagttttgtgtgcctctggac
tcgtacaggtcggagctcagcctccagccggtaacggaggacgatgccgaggatcaggct
gagcagtttgagtgctcagagggcttcagctatgaagaatttagcaacctgcagccacaa
acatgcctcaatcagtcctgccgtcgccgtggagatcagggtggcgtaatgatggtcaac
atggtgccattaagagatgctgtgacattcaaacacagtggaggtgttggggataacttt
gacgttccctttgtgcttcacctgtggccttccatcctgctacgcaacctgctgccttac
cccatctcttacaaactcaaggacagtggagcctctgcccccgaggccactttgaaccca
ggccactcggcccagcttcacactgcagtcatcaaccaatcaagactcgagctgcgtcta
ctcaactacttggctcaggactggtcatccgagtacagttttcacagtgacaaggaagag
atcaccttcatcgtgttccagtctctaggagagaatgacgaagacgagtgcgacgggaca
gggatgaagaaggcggagctcgatatagcagtgcacgtcaaatatgacctggggcaaacg
gtggttgccatccactcaccttattggatggtgaataagaccggcaggttgctgcagtac
aaagctgacgatatccaccgcaaacacccgctggactacgacatgcctctgctcttctcc
ttcaagcctcattacttcctgaaaaacaacaaggtgcgtcttatgatctcagacagtgag
ctctctgatgatttctccctggatacagttggcagccacggagatgtcaaatgcaaaggt
catgtcaaggattacttggtgggtgtgaagattgacagtagcagtttcagtctgacccgc
atcgtgaccttcgtgccgttttacatgctggtcaacagaaccaagcacagcgtgttcgta
tgtgaagtggggcagtccaactggacagaggctcggccagaacagtcagccattcccttc
tggcctgagaatgacaccaagcaactaaggatcaaagtggaaggttgtttatcgcctcct
cggataattgacttcacacggccggaaaactgcttactgctgcatctggacaactctgtg
ggggggatcacggcagacgtgaacttgtcagagcactcggccacgatccgattcttggag
taccacgacggtgctgcccccttcctcatcatcaaccacactaaagaccagactctgcat
ttccatcagagcgcccgcagagattcctggtgggtggctgacgagctactcgacctctcc
ttctcactggaggaggacagctctcagaaggaggcggagcagcaggaggagctgcaggct
gggaaagctgtgcactacacctggaacgaacccactgggtcccgggagctttgctggaag
tgtggtacttacagtgggaagctgaagactgaggaggacctgcgtgaggacatgaacaat
aaaggaaaactgtttgtgatctccttttatgaagggctccagcgcgtggtgctgttcact
gaggagcaacggatctacaagatgctctgtgagagcgagaaggcacaactggccgaacag
gaaatcatcctctcgctgcagaacgttggcgtgtctctggtcaacaacatcagcggccag
gaggtctctttcattggcatcacaagctctgatgtggtgtgggaaataaagccgaagaat
aagagccgttggaaagctctgagctctaaagaagccgagatgctggagaacaggttcaat
aagtacattgcatctggaagcgtcgaccacgccattgccgacctcgataagaaccttcag
gtgtcctttactcccaacggcatggatatgaggatgctgcagccctatgatgcaccgctc
agaaggcacttccagccgggggtgaaggtggagtacagcgtgtcacccagacagcatgcc
taccgcgttcaaatccaccgcattcagatccagaatcagctgccagggtccatcttcccc
tatgttttttaccctgtaaaactaccaaagtccatcaccgtggatgcagagccaaaacct
ctaactgatatcagcattgtcaccagaacagcaggacactctgacatctcccgcatcaag
tactttaaggtgttgattcaggagatggacctgaaagtggatttgggattcctgtatgcc
atcgtggacctgttcacagcggagaatgccagcatcatgagctcagaacaggaggtggaa
ctgtttgagaaggacatagagtacatgaagacagaactaaaccatgcctctgctgctgac
acctctcccatcagcctctatgagtacttccacatttcccctatcaagcttcatctgagt
ttctctctgagtacgggaggagaagacggcttgaaggagaagcgagataaagaactcatt
cccgtccagtccctcaacctgctgctcaagagcataggcgccacgctcaccgacgtgcag
gatgtcgtcttcaagctggccttctttgagctgaccttccagttttgtaccacccagcag
ctccaatgggaggtcatcaggcattattccaagcaggctattaagcagatgtatgtgctt
gtgctgggcctggatgtacttggaaacccttttggtctgattagaggactgtctgaggga
gtggaggctttcttctatgagccttaccagggagccatccaggggcccgaggagttcgtt
gaaggaatggctattggggtgaaagctctggtgggaggagctgtcggcggcatagcagga
gccgtctccaggataaccggaaccatggcgaagggcgttgctgccataacgatggacgag
gaataccagcagaagagacgagaggccatgaacaggcaacccagaggcctgagggagggg
ctggctcggggggggaagggattagtgtccggttttgtcagtggcatcacagggattgtt
accaaacctattaaaggagctcagaaggagggtgcagcaggcttttttaaaggtgttggg
aaaggtctggttggcgcagtggccagacctacaggaggcattattgacatggccagcagt
actttccaagggatcaagagggcagcagagacctcacaggacatcgcctcgcttcgccat
cctcgcttcatccacgaagacggtgtcatacgaccatataaggaaagcgagggcttcgga
agtcagctgctccagaaaattgagaatggacgttttgccaagtacaggtactttgctcat
gcgaaggtcaatgagtccgacttcttgatgatcactaagaggggaatcttctttgtgact
gaaggcacatttggccagcagacgtgtgagtggcagtatctgttcgaagagttcaccaag
gatcccatcattgtagagaacaagcgccttcgcatcgaggccaaggagagagtcaagtct
gtcttccatgccaaggagtttgggaagatcatcaacttcaaagatgctaagatagccaag
tgggttcttgccagattggacgatgcaagagacagtttacccaaatactga
DBGET
integrated database retrieval system
