Pungitius pungitius (ninespine stickleback): 119224730
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Entry
119224730 CDS
T07626
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119224730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppug03009
]
119224730
Ribosome biogenesis [BR:
ppug03009
]
Eukaryotic type
Pre-60S particles
RNases
119224730
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
REX3_middle
Zwint
mS26
KIX_2
Motif
Other DBs
NCBI-GeneID:
119224730
NCBI-ProteinID:
XP_037337881
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All DBs
Position
5:20296037..20303118
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AA seq
1145 aa
AA seq
DB search
MFPSSGLFSGINCPFSKRACERPHCLYKHAKELREMFGDSRQSPVVGFAGEQNCYPLNDE
TKDDSLQELERINKEIETVRHEVEQEQRRLSRYQTVLADGIKPSPTKSEAAGKKMERGPS
SCTGLTRSSSRGKKYVVDNSKPRTDLEYDPLSNFSAGLRSGKEHKGKHGKDLKRERTVAG
KSPPSRLPSSEPLDDSNEDDDLIIDIPPSPERKRARAPKPVDVVAGKPTQNKARVKTEPA
LPLKADACEAAASPPPKMEISRGHSNCNDENIRDLFSLYESTEREIVPVDGGAIDLTGCL
EEVRARPHAEKAAETGPEPASPPATADRQDTNSNNLFAEEADNPFQVDLSQWELPHCVGD
KMNRFHPKNSLFDDPTGAKQVLSAEQPAQNWLSNQWLPEMPQGPDTPGQVPGQVPTEPAW
ANGDELITGQLFVTEEDDEGEEEEEEEEEEVILIASSSDEDELKYSEVELSDSDPMEECY
RIFMEANEEQGDEKQPDVSVAADVEKPKLSVKPQESLPGKKRVAHDAKHTEPGVKSRPQP
QVLVPLRAPTMSGFTSQPSTTCKIQQVQHRASALTASLKGGQAFVVSSGYQRKPETQSAS
LPSTPTTENLQSAPVQNAHVNYISLGTAVIGVDNNLHLILPEGIFPLPVSSSASSGQVAS
VLTPISHVTTSAVAVRQMYHGPAVTALQRYRTTAPVLIPAPARKPSLASAFASSHPSPAA
AFAAPQAAVHAAVKPVPAKRKLKQCEAAKDKVPHEIRQRYVNMFTEEFLKATANVNEAFE
KALAEEKAVYNRSVNKLKYLSVAVNALKKLKNQSAVSAKDENEVKSQRSKGNISLNLNKL
KANDDKALYESLKDYILTEERLVEGNFPVQHPENPGCAVLFVDGKKGITDPLKRICCRCG
STYSVNQAGKHTRKEECNYHHGKGVTKKVPGGVETRYSCCEGVMGAPGCQVFQVHVHDSV
SLDGFVSTVPRLPSDTSCPGVYSLDCDMCYTNRGLELSRVTVVNWRLQVVYDTFVRPDNE
VIDYNTRFSGVSEEDVKGNRTSLREVQETLLSFISADTILIGHGLETDLCALKLLHGTVV
DTSVVFPHRLGLPHKLTLNNLTAEYLMRIIQESVCGHDAEEDAAACMELMLWRLKEDGKM
KKLWI
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgttcccctcatctggtcttttctctggtataaattgtcctttttcaaaacgtgcgtgt
gagcggcctcactgtttgtacaaacatgccaaagaattgcgggaaatgtttggtgactcc
cgtcaatcaccggtagttggctttgcaggggagcaaaactgttatccattgaatgacgag
accaaagatgactccctccaggagctggagcggatcaacaaggagattgaaaccgtacgg
cacgaggtggagcaggagcagagacgactgtcccgttaccagaccgtactggcagacggc
ataaaaccttcgcccacaaagtctgaggctgcaggtaaaaaaatggaaagaggtccgtcg
tcgtgcacgggcttaactcgctcatcttccagaggaaagaagtacgtggtcgacaactca
aaaccgaggactgatctggagtacgaccctctgtccaacttctctgccggcttgaggtca
ggtaaagagcataaggggaaacacgggaaagatttgaaaagagagagaaccgtcgcgggt
aagtctccgccctcccggttgccatcttcagagcccctcgacgactctaacgaggacgat
gacctgatcattgacatccctccctcgcctgagaggaagagagcgagagctcccaaaccc
gtcgacgttgttgctggaaaacccacccagaataaagccagggtcaaaacggagcccgct
ctacctctgaaagcagacgcgtgcgaggccgcagcctcgccgccgccaaaaatggaaatt
agtagagggcatagtaactgcaatgacgagaacattcgagatttgtttagcctttacgag
agtacagagcgtgagattgtaccagttgacgggggtgcaattgatttaactggctgttta
gaagaagtgcgagctcgccctcatgctgagaaagcagcggagacgggtccggagcccgcg
agtcctcctgccaccgcggaccggcaggacaccaacagcaacaacctgtttgcggaggag
gccgacaacccgttccaggtggacctttctcagtgggagctgccccattgcgttggggat
aaaatgaatcggtttcacccaaagaattccctttttgacgaccctacgggcgccaagcag
gtcctgagcgcagagcagcccgctcagaactggctcagtaaccagtggctgccagagatg
ccacaaggcccggatacgccaggccaagtgccagggcaggtgccaacagaaccggcttgg
gcaaacggagacgaactgataactggacagctttttgtgactgaggaggatgacgagggg
gaggaggaggaggaggaggaggaggaggaggttatactcattgcttccagctcggatgaa
gacgagctcaaatattctgaggtggagctgtccgacagtgatccgatggaggaatgctac
aggatcttcatggaggccaacgaggagcagggggatgaaaagcagcccgacgtgtctgtt
gccgccgatgtggagaagccaaagttgagcgtcaaaccccaggaaagcctgccaggaaag
aagagggtggctcatgatgccaaacatacagagccgggggttaagagcagacctcagccc
caggtgctggttcccctgcgggcgccaacaatgtcaggatttacctcccagccctcgacc
acctgcaagatccagcaggtgcagcacagagcctccgcgctgactgcttcgctcaaaggc
ggtcaggcctttgtggtttcctccggctaccagaggaagccagagacccagagtgcgtct
cttccttcaactccaaccactgaaaacctgcagtctgctccggtacaaaacgctcacgtg
aactacatatctctgggaaccgccgtgattggagtggacaacaacctccacctgatcctc
ccggagggcatcttccctctgccggtctcctcctcggcctcctccggccaagttgcttca
gtgctcacccccatcagccatgtgaccacgagcgccgtggccgtgaggcagatgtaccac
ggccccgcggtgaccgccctgcagaggtaccgcacgacggccccggtgctcatccccgcg
ccggcgcgcaagccgtcgctggcctcggccttcgcgtcgtcgcatccgagtcccgccgcc
gccttcgccgctcctcaagctgccgtccacgccgctgtcaagccggtgcctgctaagcgt
aaactgaagcagtgcgaggccgccaaagacaaagtgccccacgaaatccgacagcggtac
gtcaacatgttcacagaggagttcctcaaggccacggcgaatgtcaatgaagcttttgaa
aaggcgcttgctgaagagaaggccgtgtacaatcgcagtgtgaacaaactgaaatatctg
agtgttgcagtgaacgcgctgaagaagctgaagaaccaaagcgctgtttcagcgaaagat
gaaaatgaagtcaaaagccaacgatctaaaggcaacatttcacttaatcttaataagtta
aaggcaaacgatgacaaggcgttgtatgagagtttaaaggactacattttgaccgaggaa
aggctggttgagggcaactttccagtccagcacccagagaaccccggctgtgctgtcctc
tttgtagacggcaagaaaggcatcacggaccccctcaagaggatctgctgtcgatgtgga
tccacatactccgtgaaccaggcgggtaaacacactcgtaaagaggagtgtaattaccac
cacgggaaaggggtcacgaaaaaagtgccaggtggcgtggagacgcgctacagctgctgc
gagggagtgatgggagcgcctgggtgtcaggtgttccaggtgcacgtgcacgattctgtc
agcctggatgggtttgtgtcgaccgttcccaggctcccctcggacaccagctgtccgggg
gtctactccttggactgtgacatgtgttacaccaatcgcggactggagctgtccagggtg
accgtggtcaactggcgcctgcaagtcgtctacgacaccttcgtcagaccggataatgag
gtcattgactataacaccaggttttcgggcgtcagtgaggaagatgtgaagggtaaccgc
acctccctcagagaggtgcaagagaccttattgagcttcatcagcgccgacaccattctg
attggacacggcctggaaacagacctctgtgccctgaagttgctccatgggacggtggtt
gacacatcggtggtcttccctcaccgtctgggcctccctcacaagctgaccctcaacaac
ctcacagctgaatatctcatgaggatcatccaagagagtgtttgtggccatgacgctgag
gaggatgctgctgcctgcatggagcttatgttatggagactcaaagaagatggaaaaatg
aagaaattatggatataa
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