Pungitius pungitius (ninespine stickleback): 119224773
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Entry
119224773 CDS
T07626
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03030
DNA replication
ppug03410
Base excision repair
ppug03420
Nucleotide excision repair
ppug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119224773 (rfc5)
03410 Base excision repair
119224773 (rfc5)
03420 Nucleotide excision repair
119224773 (rfc5)
03430 Mismatch repair
119224773 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppug03032
]
119224773 (rfc5)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119224773 (rfc5)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119224773 (rfc5)
DNA replication proteins [BR:
ppug03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
119224773 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
119224773 (rfc5)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
119224773 (rfc5)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
119224773 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
119224773 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
RuvB_N
AAA_14
DUF815
AAA_16
ResIII
AAA_24
DEAD
AAA_assoc_2
PhoH
AAA_7
ATPase_2
AAA_19
AAA_5
AAA_30
TIP49
bpMoxR
Motif
Other DBs
NCBI-GeneID:
119224773
NCBI-ProteinID:
XP_037337979
LinkDB
All DBs
Position
5:21106930..21110362
Genome browser
AA seq
344 aa
AA seq
DB search
MASTNKGPLQSRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEEKLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFNSMVLELNASDDRGIDVVRGPVLSFASTRTIFKRGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EYVVQQESLDINPGGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSD
IANILDWSLNKDFTTAYKRILGDTPQKQILQLKTLKGLALNDILTEVHLLIHRVDFPPAI
RIGLLIKLADIEHRLASGTNEKIQLSSMVAAFQAVRDMVVSEAS
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacaaacaaagggccgttacagtccagaaacttaccgtgggttgaaaaatac
aggccacagaaactagatgatctgatctcacacaaagacattctgagcacaatccagagg
tttatcagtgaggaaaagctcccccacctcttgttctatggcccccccggaaccggtaag
acctccaccatcctcgcctgtgccaagcagctgtacaaggaaaaggaattcaactccatg
gtgttggagctaaacgcgtcagacgaccgaggtatcgatgtggtacgaggtccagttctg
agcttcgccagcaccaggaccatcttcaagaggggcttcaagttggtgatactggacgag
gccgatgccatgacccaggatgcccagaatgcattgcgacgagtgattgagaagttcacc
gaaaacactcgcttctgcctcatctgcaactacctgtccaagatcatcccagctctgcag
tctcgatgcaccagatttcgcttcggcccgctgtccccagaccagatgatccctcggctg
gagtacgtggtccagcaggagagtcttgacataaatcccggtggaatgaaggccattgtg
accttatcatcgggcgacatgagaagatcgctcaacatactgcagagcaccagcatggcg
tacgggaaggtcacagaggacacggtgtacacctgcacaggtcaccccctccgctcggat
atagccaacatcctcgactggtccctcaacaaagacttcaccacggcgtacaagcgtatc
cttggagacactccgcagaagcaaatccttcagctgaagacgttgaaaggtttggccctg
aatgatatcctcactgaggtccatctgctcatacacagagtggactttcctccagcgatt
cggatcggtctgctcatcaagctcgctgacatcgaacaccggctcgcctcggggaccaat
gagaagatccagctgagctccatggtggccgcgttccaggccgtcagagacatggtggtc
agcgaggcctcgtag
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