KEGG   Pungitius pungitius (ninespine stickleback): 119224897
Entry
119224897         CDS       T07626                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Pathway
ppug03082  ATP-dependent chromatin remodeling
ppug03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    119224897
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    119224897
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ppug01009]
    119224897
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppug03021]
    119224897
   03036 Chromosome and associated proteins [BR:ppug03036]
    119224897
Protein phosphatases and associated proteins [BR:ppug01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     119224897
Transcription machinery [BR:ppug03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     119224897
    SWI/SNF complex
     119224897
Chromosome and associated proteins [BR:ppug03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    119224897
   PBAF complex
    119224897
   SWI/SNF complex
    119224897
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 119224897
NCBI-ProteinID: XP_037338261
LinkDB
Position
5:23034425..23038287
AA seq 374 aa
MALSKTFGQKPVKFQLEEDGDFHMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAISISTEPPAYLSREQKAKRSSQW
VPTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRL
DMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTD
SLLEEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCCELGLGGEFVTTI
AYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRN
TRRMRRLANTAPAW
NT seq 1125 nt   +upstreamnt  +downstreamnt
atggcgcttagcaaaacgtttggacaaaaaccggttaaatttcagctcgaggaagatgga
gactttcacatgatcggatcggaggttggaaactacctgcgcatgttcagaggctccctg
tacaagagatacccgtcgctatggaggaaactggcttcagtggaagagcggaagaagatc
gtggagtcgtctcacgatcacggctacactcagctggccaccagcgtgactctgctgaag
gcctctgaggtggaggagatcctggagggaaacgacgagaagtacaaagccatctccatc
agcacggagccgcccgcctacctcagcagggagcagaaggccaagaggagcagccagtgg
gttcccacgctgcccaacagttcccaccacctggacgccgttccctgctccaccaccatc
aaccgcagccggctgggacgcgacaagaagaggacgttcccgctgtgctttgatgaccac
gacccggcggtgatccacgagaacgccactcagtcggaggtcctggtccccatccgtctg
gacatggagatcgaggggcagaagctccgagacgctttcacctggaacatgaacgagaag
ctgatgacgcccgagatgttcgcggagatcctctgtgacgacctggacctcaacccgctg
gccttcgtccccgccatcgcctccgccatccggcagcagattgagtcgtaccccacggac
agcctcctggaggagcagacggaccagagggtcatcatcaagctcaacatccacgtgggg
aacatctcgctggtggaccagttcgagtgggacatgtcggagaaggagaactccccggag
aagttcgccctgaagctctgctgcgagctgggcctcggcggcgagttcgtcaccaccatc
gcgtacagcatccgggggcagctgagctggcaccagaggacctacgccttcagtgaaaac
ccgctgcccacagtggagatcgccatcaggaacacgggcgatgccgaccagtggtgcccc
ctgctggagacgctgaccgacgccgagatggagaagaagatcagggaccaggacagaaac
accaggcggatgaggcgactggccaacacggcccccgcatggtag

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