Pungitius pungitius (ninespine stickleback): 119225045
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Entry
119225045 CDS
T07626
Symbol
cacna1ba
Name
(RefSeq) LOW QUALITY PROTEIN: calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04010
MAPK signaling pathway
ppug04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119225045 (cacna1ba)
04020 Calcium signaling pathway
119225045 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ppug04040
]
119225045 (cacna1ba)
Ion channels [BR:
ppug04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
119225045 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
119225045
NCBI-ProteinID:
XP_062418306
LinkDB
All DBs
Position
5:9777952..9945717
Genome browser
AA seq
2337 aa
AA seq
DB search
MARVEDEVSGRYGGSCSTGPSRGAGRPPGIQRVYKQTMAQRARTMAIYNPIPVKQNCLTV
NRSLFTFSEDNIIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPALDQTPMSKRLD
DTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVGADFDLTTL
RAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMGKFHR
TCFRIDTDKQVADFPCGLEAPARTCANGTACREYWTGPNFGITNFDNILFAVLTVFQCIT
MEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKRQEF
LKLRRQQQIERELIGYLEWICKAEEVMLAEEDQNAEEKSLDGAWYKKKHNSSVLKRTKKS
KNDLINAEEGEDHFTDISSAGSPFARASLKCKNESSSYFRRKEKRMRFTIRHLVKSQRFY
WTVLCLVGLNTLCVAIVHYDQPEWLTFALYLAEFAFLGLFLAEMFIKMYGLGPQNYFHSS
FNCFDFGVIIGSIFEVIWAAIKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNS
MKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQILTGEDW
NAVMYHGIESQGGVHRGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQ
EGAINKKLALQKAKEVKEVSPTSATNISIAALVTRSRGNVHSSSPSICSVNSLKEQQKSM
KTMSVWEQRANQLRRQNQASCEALYSELELEEHLRLSSALHTRPDMKTHLDRPLVVEPRE
GPFPAAHHHHHHKSCMPEAGLTATDHPPPVPRHHNCHRDRDGDRAKARQDTNDNNFTSKD
GGHHVHHRNSKEHKGSQGNKRKSEGSHRERGRTHNHQSSVDHSGAGGLPRVREHRHHSHR
QSKGGNRTVNSGGWAEPRSRHKDRLSNRNGDRLSKEDSGSPGERMRHRIHGSGGQSVEEE
ESNKRKKTHSNRDKFGDLSGQSFAFSPQHNFQGCRWPPDQPEDADNQRAVRRTGQTSIQI
LPVTITSPSGDRPFIQMNSFDCETMPMKETGSKPILPYSSMFIFGNTNLVRRLCHYIVTL
RYFEMSILVVITMSSIALAAEDPVWINAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLL
HPGAYFRDLWNILDFIVVSGALVAFAFSGTKGKDISTIKSLRVLRVLRPLKTIKRLPKLK
AVFDCLVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKSLEKDCKGQFLDY
DQDEVAPMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDMGPNPGYR
IEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINARPL
TRYMPQDQQSFQYRMWKFVVSPPFEYSIMIMIALNTIVLMMKFHGAPDFYEAMLRNLNIV
FTTLFSLECILKIIAFGPLNYLRDAWNVFDFVTVLGSITDILVTEINTTDKLLNLSFLRL
FRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALNED
TAINHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSQRACDEHSGSHGNECGSDFAYFY
FVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYL
DMYQMLLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNSVHFTSTLMALIRTALEIKLA
SGMVAQCLSDAELRKELSTVWPSLSQKTMDLLVTPHKSNELTIGKVYAALMIFDYYKQNR
SKRLQQQQQQGASRSQCKVGALFTPLLPLTHMQEKDLPMMLNSVEPPNMLQPQPKTHAES
QPQTRPSSNSLNNGGTLPGRNHNIKASSSWVMEKPEEVAGVETKRTVFRGPSKDTPDIAV
MQESVEIKKMETGVSGTIPVPGTGLDNNGRAASMPRLNAELPTVPDGSCMKRSASSVAPQ
QPQEINLQDSTLEKPIQDRPRRRHRHHHRQCHRHREKRQRSFETTAGGQLPRAGAAGEPE
SETAASKERGHDRGRSHDRKHYSSADKQRYYSCDRYCSREHCPTKSANPSCAVSPSGGQE
TSNKQGSVWVKDSPVSLNSIYSTPSRGRRRLPRPPVTPRQGVAYKTANSSPVHFVSSRAS
LSFGLSEHDALQHGNLHSPCPVTRFSSEPFLGRGHTEDLDSLYASLQDQLEIFQDAVSVT
FSSSAGRSSQTTLPRMMGALLPAPQQNLGVSNGYHFSIGGSTSPGSGIRAQAEDKWC
NT seq
7014 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgttgaagacgaggtctccggccgctatggaggcagctgttccacgggcccg
agcagaggggccggccggcccccgggaatccagcgggtgtacaagcagacgatggcgcag
agagccaggaccatggccatttacaaccccattccggtcaaacagaactgcctaaccgtt
aaccgctctctgtttaccttcagcgaagataacatcatacggaaatatgccaaaaggatc
acagagtggcctccatttgagtacatgatcctggccaccattatagcaaactgcattgtg
ctggctctggagcaacaccttccggccttggaccaaacaccaatgtcaaagcgtctggac
gacacagagccctactttattggaatattttgttttgaggctggcatcaagatcatcgcc
ctgggctttgcctttcacaaaggctcgtacctgcgtaatggctggaatgtaatggatttt
gtggtggtcctaacagggatccttgccaccgttggggctgactttgatctgacgacactg
agggcagtgagagtgctgcggccactcaaactggtctccggcattccaagtcttcaggtg
gtattaaagtccattatgaaagccatggtgcctctgctgcagattggcttgctactcttc
ttcgccatcctcatgtttgcaatcattggccttgacttctacatggggaagtttcaccgc
acctgctttagaatcgacacagacaaacaagtagcagatttcccttgtgggctggaggct
ccagcaagaacctgtgctaacggcacagcctgcagggagtactggactggacccaacttt
ggtatcaccaactttgacaatatcctcttcgcggttctcacggttttccagtgcatcaca
atggagggatgggtggacattctctacaacgccaacgatgcttcagggaacacatggaac
tggctatacttcatcccacttatcataattggttcctttttcatgctaaacctggtgttg
ggtgtgctgtcaggggagtttgccaaggagagagagcgggtggagaagcggcaagaattc
ctgaagctgcgcaggcaacagcagattgaaagggagttaattgggtatctggaatggatc
tgcaaagcagaggaggtgatgctggctgaggaagaccagaatgcagaggagaagtctctg
gatggagcatggtacaaaaagaaacacaacagctctgtgctgaaaaggactaagaagagt
aagaatgacctcatcaatgcagaagaaggcgaagaccacttcacagacatctcatccgct
gggtcgccgttcgcccgggccagcttgaagtgtaagaacgagagctcctcttactttaga
agaaaagaaaaaaggatgcgcttcaccatccgccatctggtcaagtcccaaagattctac
tggacagtgctgtgtctggttggcctcaacacactgtgtgtagccattgtccactatgac
cagcctgagtggctcacctttgcactctacctagcagaatttgcctttcttggcctgttt
ctggctgagatgttcataaaaatgtatggccttggaccccagaactacttccactcatca
ttcaactgttttgactttggggtgatcattggcagtatttttgaggtgatctgggctgcc
atcaaacctggggcatcatttgggatcagtgtgctgcgggctctgcggctgctcaggatt
tttaaagtcacaaagtactggaactctttgaggaacttggtggtatcccttctcaactca
atgaagtcaatcatcagcctgctgttcctcctcttcctcttcattgttgtctttgctctt
ttgggcatgcagctgtttggtggccaatttaattttgaggacgaaacgccaacaacaaac
tttgacacattcccagcagcgattctcactgtgttccagatcctaactggggaggactgg
aatgcagtcatgtaccatgggatcgaatcccagggaggagttcacaggggaatgttctcc
tctatctattttattgttctcactctctttggaaactacacacttctcaacgtattcttg
gctattgctgtcgataaccttgcaaatgcacaagagcttactaaggatgaagaggagcag
gaaggtgccatcaataagaagcttgccctccagaaggctaaggaggtaaaggaggtcagc
cccacgtcagccactaacatctccattgcagctttggtaacacgcagtcgaggtaacgtg
cactctagcagcccatctatctgcagtgttaactcccttaaggaacagcagaaatcaatg
aagacaatgtctgtttgggagcagagggccaaccagctgaggaggcagaaccaagcgagc
tgcgaggccctctacagtgagctggagcttgaggagcatctccgcctgtcctcagccctc
cacacccggcctgacatgaaaacccaccttgaccggccgctcgttgtcgagcctcgtgaa
gggcctttccctgctgcccatcatcaccaccatcacaagtcttgcatgccagaggcaggg
ttgacagccactgatcatcctccccctgttccccggcaccacaactgccacagagacaga
gacggggaccgggcaaaagcaagacaggatacaaatgacaacaattttacgagtaaggac
ggaggccatcatgtccatcacaggaactccaaggaacacaaaggcagccagggaaataag
cgaaaaagtgaagggtcccacagagagagaggcaggacacacaaccaccagagctcagtg
gatcacagcggagcgggaggactccctagggtgagagagcatcggcatcactcgcaccgg
cagtccaaagggggcaacaggacagtaaacagtggtggctgggcagagccaagatcccgc
cacaaagacagactgtctaacaggaatggggatcgactttctaaagaagacagtggaagc
cctggagaaaggatgaggcatcggattcatggatccgggggccaatcagttgaagaagag
gagtccaacaaaagaaagaagacccacagcaacagggacaagttcggtgacttgtcggga
cagtccttcgccttctccccccagcacaactttcaggggtgtcgctggccacctgaccaa
ccagaggacgcagacaaccagagggcggtcagaagaaccggccaaacctccattcaaatt
cttcctgtgactatcacatccccatctggagaccgtccctttatacaaatgaatagtttt
gactgtgagacaatgcccatgaaggagactggatccaaacccatcctgccttacagttcc
atgttcatctttggaaacactaatctggtgaggcggttatgtcactatattgtgactctg
cgttattttgagatgtccatcctggttgtcattactatgagcagtattgctttggcagca
gaagaccctgtctggataaacgctcctcgcaacaatgtgctcaaatatctggactacgtc
ttcactggtgttttcacgtttgaaatggtgatcaagatggtggaccttggcctgttgctt
catcctggagcctacttcagagacctctggaacattctagacttcatagtggtcagtggg
gcactggtggcttttgcattttcggggaccaaagggaaggacatcagcacaatcaagtca
ttgagggttctcagagtgctcaggcctctaaaaaccatcaaacgtcttccaaagctcaag
gcggtgtttgactgtctggtcaattcattaaagaatgtgctgaacatcctcatagtttac
atcctcttcatgttcatctttgcggtcatcgcggttcagctctttaagggaaaattcttc
tactgcacagacgagtccaagagcctcgagaaggactgcaaagggcagtttcttgactac
gaccaagatgaggtggcccccatgcccagggagtggaagaaatatgagttccactatgac
aatgtcctttgggccttcctgaccctcttcacggtctccactggggagggctggccaact
gttttgaagcactctgtggatgctacctttgaagacatgggtcccaatccaggctaccgg
atagaaatgtccatcttctatgtagtttactttgtggtcttccctttcttttttgtgaac
atctttgtcgctctcatcatcatcaccttccaggagcaaggagacaaggccttatctgag
tgcagcttggaaaagaatgagagggcttgtattgactttgccataaacgccagacctctg
acacgctacatgcctcaggaccaacaatcctttcagtataggatgtggaagtttgtggtc
tcacccccatttgaatattccatcatgatcatgattgctctcaatacaatagtactcatg
atgaagttccatggagctccagacttctatgaagcaatgctgaggaaccttaacatagtc
ttcacaacccttttctctctggagtgtatcctcaagatcattgcgtttggtccgttgaac
tacttaagggatgcctggaatgtgtttgactttgtcacagtgttgggcagcatcactgac
atcctggtgacagaaatcaacaccacggacaaactgctgaacctgagcttcctgaggctc
ttcagagctgctcggctcatcaagctgctaagacagggctacaccattcgcatcctgctg
tggacctttgtccagtccttcaaggccctgccttatgtttgccttctgattgctatgctg
ttcttcatttatgccatcattgggatgcaggtgtttggcaacattgcgctgaatgaggat
acagctatcaatcaccacaacaactttcgtactttcctccaagctctcatgctgctattc
aggagtgcaactggtgaggcctggcacgagataatgttatcctgtctgagtcagcgagcc
tgtgacgagcattcggggtcccatgggaacgagtgtggcagtgattttgcatacttctac
tttgtctctttcatcttcctctgctctttcctgatgctgaacctgtttgtggctgtcata
atggacaactttgaatacctaaccagagactcctccatcctaggacctcatcacctcgat
gagttcatccgggtttgggccgagtatgacccggctgcatgtggccgtatcaagtacctt
gatatgtatcagatgctgctccacatgtccccacccttaggtttgggaaagaaatgtccg
ccaagagtcgcctacaagcgcctcgttaaaatgaacatgcccattgctgatgacaacagc
gtccatttcacctccaccctgatggccctgattcgcacggccctggagatcaaactggcc
tcaggcatggtagcccagtgcttatctgatgccgagttaaggaaggagttgtctacagtg
tggcccagtctctcccaaaagaccatggatctgttggtcacacctcataaatccaatgaa
cttaccattggaaaggtttatgcggccctgatgatcttcgactactacaagcagaatcga
tcgaagaggctgcagcagcagcaacaacagggcgcgtcacgctcccagtgcaaggtcgga
gctctgtttacgccattgctgcctctgactcacatgcaggagaaagatctgcctatgatg
ttaaacagtgtggagcctcccaacatgcttcagcctcagcccaaaacccatgctgagtcg
cagccacagaccagacctagctccaactccctcaacaatggaggcacactgccaggacgt
aaccacaacatcaaagcatcatcttcttgggtaatggagaaacctgaggaagtggccgga
gttgagactaagagaaccgtgttcaggggcccatcaaaggacacaccagacattgctgtc
atgcaggaatccgtggagataaagaaaatggagaccggtgtcagcggcacaatcccagtt
cctggcacaggtctggacaacaacggcagagcagcttctatgcctcgactcaatgctgaa
ctgccgactgttccagatggtagctgcatgaagcggtccgcctccagtgtggccccacag
caaccccaagagatcaacctgcaagactccaccctggagaaacctatccaagaccggccc
cgccgccgccaccgccaccaccaccgccaatgccaccgtcaccgagagaagaggcagaga
tcgttcgaaacaaccgcaggtggacaactacctagagctggtgcagcaggagagccagag
tctgaaacggctgcctccaaagaacgaggacacgaccgcggacgctcccacgacaggaag
cattactcctctgcagataagcagcgatactattcctgcgaccgctactgcagccgggaa
cactgccccaccaaatctgctaaccccagctgtgccgtctcccccagcggggggcaggaa
accagcaacaagcagggcagcgtttgggttaaagacagcccagtgtcactgaattccatt
tatagcacgccaagccgaggacgtcggcggcttccccgcccccccgtgactccgcggcaa
ggggtggcctacaagactgccaattcatccccggtgcactttgtgtccagccgggcttct
ctgagcttcggcctttcggagcacgacgccctgcagcatggtaaccttcactctccctgc
cccgtcactcgtttcagctctgagcccttcttgggtcggggccacaccgaggacctggac
agcctgtacgccagcctccaggaccagctggagatctttcaggatgcagtgtcagtgact
ttcagctcaagtgccggacgctcatctcagactacactgcctcgcatgatgggagccctg
cttcctgccccgcagcagaacctaggggtgtctaacgggtaccacttcagcattggggga
agcaccagcccaggctctggtattagggcacaggcagaggataaatggtgctag
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integrated database retrieval system
