Pungitius pungitius (ninespine stickleback): 119225094
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Entry
119225094 CDS
T07626
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119225094
03041 Spliceosome [BR:
ppug03041
]
119225094
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
119225094
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
119225094
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
119225094
NCBI-ProteinID:
XP_037338664
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All DBs
Position
5:complement(19125419..19132403)
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AA seq
392 aa
AA seq
DB search
MMEDDQPRTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVDTAGNDPYCFVEFYDHRHA
AASLAAMNGRKIMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEITTEDVKAAFGPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
TTYETGNSKHLSFDEVVSQSSPSNCTVYCGGVSTGLTEQLMRQTFSPFGQIMEIRVFPDK
GYSFVRFNSHESAAHAIVSVNGTSIEGHIVKCYWGKETPDMMNPMQQMPLPQQNKMSFPA
AAAAAQPYGQWGQWYGNGPQISQYVPNGWQVPTYNVYGQAWNQQGFNHLPASAGWTGMSA
ISNGGVMEPTQGLNGSMLANQPGMGAAGYPTH
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacgatcaacccagaaccttgtatgtggggaatctgtccagggatgtcacc
gagcccctcattctacaggtcttcacccaaataggtccctgcaagagctgtaaaatgata
gtcgatacggctggaaatgatccgtactgctttgtggagttctatgaccacaggcatgct
gctgcctcattggcagccatgaatggaaggaaaataatgggtaaggaggtcaaagtcaac
tgggccacgacgccaaccagccagaaaaaagacacaagtaatcactttcacgtcttcgtt
ggagacctcagcccagaaataactacagaagacgtcaaagctgcctttgggccatttggc
cggatatcagatgctcgtgttgtgaaagatatggctacagggaaatctaaaggctatggc
tttgtgtcattcttcaacaaatgggacgcagagaacgccatccagcagatgggcggtcag
tggttaggaggcagacagatccgaactaactgggccacaagaaagccccccgctccaaag
accacctatgaaacaggtaactccaagcacctttcctttgacgaggtagtgagccagtcc
agcccaagtaactgcactgtgtattgtggcggagtcagcacaggacttacagagcaactg
atgagacagactttctctccctttggacaaatcatggaaatccgagttttcccagacaaa
ggctattcgttcgtgaggtttaactcccatgagtcggcagcgcatgccattgtctctgtg
aatggcacctcaatagagggtcatatagtgaaatgctactggggtaaagagaccccagac
atgatgaacccgatgcagcagatgcctctgccccagcagaacaagatgagcttccctgcg
gcggcggcggcggcccagccctacggccagtggggccagtggtacggcaacgggccccag
atcagccagtatgtcccgaacgggtggcaggtccccacctacaatgtctacggccaggcc
tggaaccagcagggcttcaatcacttaccggccagtgctgggtggactggcatgagcgcc
atcagtaacggtggggttatggagcccacacagggattgaatgggagtatgctagccaac
cagcctggtatgggagccgcaggataccccacacactga
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