Pungitius pungitius (ninespine stickleback): 119225252
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Entry
119225252 CDS
T07626
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119225252 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119225252 (usp39)
Spliceosome [BR:
ppug03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
119225252 (usp39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
119225252
NCBI-ProteinID:
XP_062418206
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Position
5:complement(85819..90710)
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AA seq
504 aa
AA seq
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MMISLKREREAEVEDDDDEEEEGRVAAKIGRGRATEDRRSRHCPYLDTINRSVLDFDFEK
LCSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEII
DSSLEDITYVLKPTFTKHHIAGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQA
FSNVPPLRNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQA
VVLCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKKSIIAKAFQGSMRIFSKKLPHP
DLTPEEKQALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFN
GNTEKEYKTYKENFLKRFQLTKLPPYLVFCIKRFTKNNFFVEKNPTIVNFPITNVDLREY
LTEEAQLTEKNTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEMQDLQVTDILPQMIT
LSEAYIQIWKRQESDDDTNHHTVV
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatgatttctttgaagcgagaaagggaggctgaagtggaggatgatgatgacgaggag
gaagaaggcagagtggcagccaaaataggccgaggacgtgcaaccgaagaccggagaagc
cgccactgtccttaccttgacaccataaacaggagtgtgctggactttgactttgagaaa
ctttgctccatctctctctcccacatcaatgtctatgcctgccttatatgtgggaaatac
tttcaaggtagaggtttgaagtcccatgcctacactcacagtgtgcagttcacccatcac
gtgttcctcaatctccacactctcaagttttactgtctgccagacaactacgagatcatt
gactcttcactagaagacatcacgtatgtgctgaaaccaacgttcaccaagcaccacatt
gcaggtctggacaagcagggaaaactctaccgagcctacgatggcacaacctacctgcca
ggcattgtagggctgaacaacatcaaagccaatgactatgccaatgtggtcctccaggct
ttttccaatgttccgccattgcgaaactactttctggaggaggaaaactacaggggaatc
cgccggccaccgggggacatcatgttccttttggtgcagaggtttggtgaactaatgcgc
aaactttggaatccaagaaacttcaaggctcatgtttctccccatgagatgctgcaggct
gtagtgctgtgcagcaagaagaacttccaaattactaagcaaggagatgccgtggacttc
atgacgtggttcctgaatgctctgcatggtgctcttggaggcacaaagaaaaaaaaatca
atcatcgcaaaagcatttcaaggctccatgcggatcttctccaagaaactgccacatccc
gatttaacaccagaagagaaacaggccttgcttgtgacggaggagtaccaggagcagatg
tccgagtccactttcctgttcctaaccctcgacctcccaacagctccactttacaaggat
gagaaggagcagctcattatcccgcaagtccctctcttcaacatcctgggaaagttcaat
ggcaacacagagaaggagtacaaaacctacaaagagaattttctcaaaaggttccagctg
accaaactgcctccgtaccttgtcttttgcatcaaaagattcaccaagaacaacttcttt
gtagaaaagaaccctacaattgtcaatttccccatcacaaatgtagacctccgtgagtac
ttgacagaagaagctcaacttacagagaaaaacacaacctacgaccttgttgccaacgta
gtgcacgatgggaaacccactgaaggagcatacagaatacacgttctgcatcatggaact
gggaagtggtatgaaatgcaggatctgcaggtgactgacattctcccccagatgatcaca
ctgtcggaggcctacatccagatctggaagagacaagagagtgacgatgacacaaaccac
cacactgtggtgtaa
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