Pungitius pungitius (ninespine stickleback): 119225397
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Entry
119225397 CDS
T07626
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119225397
04121 Ubiquitin system [BR:
ppug04121
]
119225397
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
119225397
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
119225397
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-BED
Dimer_Tnp_hAT
ZBED1_RNase-like
ZBED1_RNase-like_helical
zf-C2H2-SPIN-DOC
Motif
Other DBs
NCBI-GeneID:
119225397
NCBI-ProteinID:
XP_037339119
LinkDB
All DBs
Position
5:complement(13411329..13414316)
Genome browser
AA seq
682 aa
AA seq
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MKRTGRRRSSVWDCFEQVGNFVRCMKCDATLKYCGGATSSMMNHMSRHHPSTAPSDEDEK
PVICTVQCIDDESAASADIMQVAIMSPHMNTAAHLSEREYGERKRLKRSSVWDIFIKVDE
EVHCTMCDTKLKYRSSTTSMMYHIKNKHPDTMPHDGGSVATHAEVTELISRMIEKDMLPV
NVVGGDGFRELLAYTVHNYKIPSAADITRLVEGHFHEKVEELVVQLAKVEKLALTADLWT
ALPFQRYITVSCSFITEDWQGRSAVLQTHKLPSDSHTPADSVTGRLLNTVQIWGIAGKVT
ACVHNCTQGISPPQAFIRGTWDYATCFATTLQLAVSDGLSEDLVSIIVAAGKLVKHFNHS
LLASEALETKQVQMCLPQHTLIQSRKARWDTICDMFERLLEQRWAIKAVLSDRTITNRQE
AQTLEIEDDCWQIIENFTPVLATLKWATTVISADTEVSISNIYPITFSLIQTHLVPKEND
VEQVSEFKLKVQDSLRNHMEVDSSDLSSKPALIASMLDPRHKHLSFLTPTGRLAAKVKLH
ELVSKLDVITATVGPKDEQQEILVTPDISQVAMPSQLRSDTKNTMMLLLGDNYSSPYATD
SEAQVDYYLRDIAPSLDINPLEWWRVNGPRFPKLATLARHYLCVPGVSLPSLLSEAGQTF
ATMRTRLSPEHVDMMIFVNRNA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcacgggcaggagacggagctcggtgtgggactgttttgaacaagtgggaaac
tttgttcgctgcatgaagtgtgacgcgacattgaagtactgcggcggagcaaccagctcc
atgatgaaccacatgagccggcaccatccgtccaccgcgccgtcagacgaggacgagaag
ccggtgatttgcaccgtgcagtgcatcgacgacgagagtgccgccagtgcggacatcatg
caggtcgccatcatgtcaccacacatgaacacggcggcccacctctccgagcgcgagtac
ggggagaggaagcgcctgaagaggagctccgtgtgggacattttcatcaaagtggacgag
gaggtgcactgcacgatgtgcgacaccaagctcaagtacaggagcagcaccaccagcatg
atgtaccacatcaaaaacaagcaccccgacaccatgccccacgacggcggctcggtggcg
acccacgcagaggtgactgagctcatctccagaatgatagagaaggacatgctgcccgtc
aacgtggtcggcggggatggttttcgggagctcctggcgtacactgtgcataattacaaa
atcccatccgccgcagatattacgcgccttgtcgaaggccatttccacgagaaagtggag
gagctcgtagtgcagctggctaaagtggagaaattggcgctgacggccgacttgtggacg
gcgcttccctttcagaggtacatcacagtttcctgttcctttataacagaggactggcag
ggcaggtcagccgtgctgcagacacacaagctgccatcggacagccacacacctgccgac
agtgtcacggggaggctcctgaacactgtgcagatctggggcatcgccgggaaagtgaca
gcgtgtgttcataactgcacgcagggcatctcgccaccccaggcgttcattcgtggcacg
tgggactatgccacttgctttgccaccacactgcagctggcagtcagtgatgggctgagt
gaggatctggtcagtatcattgtggcagcggggaaactagtcaagcacttcaaccacagt
ttgctggccagtgaagccttggagaccaagcaggttcagatgtgcctgccgcagcacacg
cttatccagtcgcgcaaagctagatgggacaccatctgcgatatgttcgaacggttactg
gaacaacggtgggcaattaaagccgtgctctcagatcgcacaatcactaacagacaggaa
gcccaaaccctagagatcgaagacgactgctggcagataattgagaattttacacctgtg
ctggcaactctgaaatgggcaacaacagtcatatctgcagatacagaagtatccatttca
aacatttacccgatcacattcagcctcattcagacccacctcgtgccaaaggaaaatgac
gttgaacaagtctctgagttcaagctgaaagttcaggattcacttagaaatcacatggag
gttgactctagcgacttatcctccaaaccagctctgatcgcctcaatgctggacccccgt
cacaaacacctcagtttcctgacgccaacagggagacttgcggcaaaggttaaactgcac
gaactggtttcaaaattagatgtgataacagctactgtgggcccgaaggatgaacagcag
gagatcctggtcacaccggacataagccaggtggcaatgccctcacaactgagaagtgac
accaaaaacaccatgatgttgctcttaggagacaactacagttccccctatgccacagac
tctgaagctcaggtagattactacttgagagacattgcgccgtcactggacataaaccct
cttgaatggtggcgggtgaacggaccaagattccccaaattagccactctggcgaggcac
tatttgtgtgtacctggggtgtcgctgccgtctttattgtccgaggctggacaaacattt
gcaacaatgcgaactagactgagccccgagcatgttgacatgatgatctttgtaaacaga
aatgcataa
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