Pungitius pungitius (ninespine stickleback): 119225557
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Entry
119225557 CDS
T07626
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119225557 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ppug04990
]
119225557 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
ppug04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
119225557 (pdlim5a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
119225557
NCBI-ProteinID:
XP_037339397
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Position
5:complement(883767..929017)
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AA seq
566 aa
AA seq
DB search
MSSNYSVLLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGMGIGDVVLSIDGIATE
GMNHLEAQNKIKSCTGNLSLNLKKASSAPKPPPVAPKDDRSDIIKPVALTPPPSAACPPP
HAPCPAKAPRPHGGCASESQYPPFIPSPSSAFTAAPCNSSPLPPPPPPVCYPSSSSSSST
TSSPPPVLLAPQPSVYNTPISLYSAENACEVALGQMRGLLESQGGALPLQFNGVPRKHIV
DTDINFYHVPTHADASRKRITEDTEDWRPRGGTTQSRSFRILAQITGTERAQDEEADEAK
KTKEEPEEPELNSHQSAVVKTMIKGPVAIQGHGPRTGLITPSFGMKGNGSAIIPRCPVPS
RPLPQPHPKDEDTLVQMAEHIPAGTRTPMCGHCNMVIRGPFLVAMGKSWHKEEFNCAHCR
ISLADTGFVEEQGSVYCEHCYEDFLAPTCSRCQSKVLGEVINALKQTWHVHCFLCACCQQ
PIRNNTFHLEDGEPYCEQDFYSLFGTSCRGCEFPIEAGDKFLEALGYTWHDTCFVCTLCC
TTLEGQTFFSKKDKPLCKKHAHTLKI
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagcgtcctgctcctgggcccggccccttggggcttcaggctgcag
ggaggcaaggacttcaacatgcccctcaccatctccaggctgacagatggtggaaaggcg
gctaaagggggcatgggtatcggagacgtggttctgtctattgacggcatcgccacggag
ggcatgaaccacctggaggcccagaacaagatcaagagctgcaccggaaacctcagcctc
aacctaaagaaggcctccagtgctcctaaacctcctcctgtggcaccaaaggatgaccga
tcagacatcataaagccagtggcgctcacccctcccccttcagcagcctgtcccccacct
cacgcaccttgccccgccaaagcccccagacctcacgggggctgtgcctcagagagccaa
taccctcccttcatcccatccccatcctctgccttcactgccgctccctgcaacagcagt
cctcttcctccccccccgcctcctgtctgttacccatcgtcttcctcctcctcctccacc
acctcctccccccccccggtcctcctcgcgccccagccatcagtgtataacacccccatc
agcctgtactccgcggagaacgcatgtgaggtggccctggggcagatgaggggcctgttg
gagagtcagggaggagccttgcccctgcagtttaatggagttcccaggaaacacattgtg
gacacggacatcaatttttaccacgtgcccacccacgctgatgccagcaggaagcgcatc
acggaggacacggaggactggcgtccacgcggcgggacaacccagtccagatctttccgg
atcctggctcagatcaccggtaccgagcgtgcccaagatgaggaagctgacgaagccaag
aagacaaaagaggaaccagaggaaccagaactcaacagccaccagtctgccgttgtcaag
accatgatcaaaggaccagttgcaatccagggtcacggcccacggactggtttgattacc
ccatcttttggtatgaagggtaatggaagtgccattatcccgagatgtcccgtcccatcc
agaccattacctcagccccacccaaaagacgaggacaccctggtccagatggcagaacac
atccctgctgggactcggacgcccatgtgtggccactgcaacatggtgatcagaggaccc
tttctagtagcaatggggaaatcatggcacaaggaggaatttaactgtgcccactgccgc
atatccctggcagacaccggctttgtggaagaacaaggatccgtctactgtgaacactgc
tatgaagacttcttggccccgacgtgcagccgctgccagtccaaagtactgggggaggtg
ataaacgccctcaaacagacgtggcacgtccactgcttcctctgcgcttgctgtcagcag
ccaatcagaaacaacaccttccacctggaggatggagaaccgtactgtgaacaagacttc
tacagtctgtttgggaccagctgccgtggctgtgagttccccatcgaggctggagacaag
ttcctggaggccctcggctacacctggcacgacacctgcttcgtctgcactttgtgctgc
acgacgctcgagggccagaccttcttctccaagaaagataaacctctttgcaagaaacat
gctcacacactgaagatatga
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