Pungitius pungitius (ninespine stickleback): 119226178
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Entry
119226178 CDS
T07626
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X3
KO
K14308
nuclear pore complex protein Nup54
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119226178 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119226178 (nup54)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119226178 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
119226178
NCBI-ProteinID:
XP_037339683
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All DBs
Position
18:4188956..4196440
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AA seq
583 aa
AA seq
DB search
MAFSFGGATSNPAASTSGFSFGSFGAKPTASTAAFGFGPAATTTTTAASGFGTLTAPGFG
AAATTAAAPATGFSFGSTNTGFGGLGAGSTTAGTFGGFGTTTTTAAAPGSTFSFAGPANT
AGGLFGNTQNKGFGFSSGLGAGTAAGATGFGTGLGTTGLGGFGGFNIQPAQQQPGGLFGQ
QAQLQGQAQPTLLYQQVTALSAPTLLGDERDSILAKWNQLQAYWGTGKGYYSNNNQPVDF
SQENPFCRFKAVGYSCVPVSKDEDGLVVLLFNRKEADVRAQQQPLVESLHKVLGNNQTLT
VNVDGVKALPNDQTEVIVYVVERSPNGTSKRIPATTLFSYLEQANVKVQLTQIGVVMSVA
RTELSPAQLKQLLQNAPAGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELFRRLQIQDQMN
KQHQTRVDIISSDISDLQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQ
VDEEHLRVQLDTIHSELNAPTQFKGRLNELMSQIRMQNHFGAARSEERYSVDADLLREIK
QHLKQQQDGLSHLISVIKDDLEDIKLIEHGLSDSGHMKGGILS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggagccacgagtaacccagctgcaagcacgtccgggttttct
ttcggttcatttggtgccaaacccaccgcatcaacggcagcgtttggctttggccccgca
gccaccaccacaaccaccgccgcatccggattcggcactctgacagcccctggttttggg
gcagccgccactactgctgccgcaccggccacaggatttagttttggctccaccaacact
ggatttggggggctgggagctggaagcaccacggctggcacatttggtggctttgggaca
actacaacaactgctgctgcaccagggtccacatttagctttgctggtcctgccaacact
gcaggaggcctgtttggtaacacgcagaacaaaggttttgggttctcctctgggcttggc
gctgggaccgctgcaggggcaacgggatttggaactgggctaggaacaactggcctcggt
gggtttggaggctttaatatccagccagctcagcagcagccagggggcttgtttggccag
caggcccagctacagggtcaggctcagcccaccctgctctaccagcaggtcactgctctt
tcagctcccactttgttgggagatgagcgtgactccattttagccaagtggaaccagttg
caggcctactggggcactgggaagggctactacagcaacaacaaccaacccgttgacttc
agccaagagaaccctttctgcagattcaaggcggtcggctacagctgtgtcccagtgagt
aaggatgaggatggtttggtggtcttgctttttaatagaaaggaagctgatgtgcgagct
cagcagcagccactggtggagtccctccacaaagtcctgggaaacaaccagaccctcact
gtcaatgtggacggcgtcaaagctctgcccaatgaccagaccgaggtgatcgtttatgtg
gtggagcgttctcccaatggcacctccaagcgcatccccgccaccacgctgttcagttat
ctggagcaggccaacgtcaaagtccagctcacgcagatcggcgtggtcatgtccgtggca
cgcacagagctgtctccggctcaactcaagcagctgcttcaaaacgcacctgcaggagtg
gaccccattatttgggagcaggctaaggtggacaacccggacccagagaagttaatacca
gtgcccatggtgggtttcaaggagctttttcgcaggctgcaaatccaggatcagatgaac
aaacagcaccagaccagagtggatattatatccagtgacatcagtgacctccagaagaac
caggcgaccacagtggctaaaatagcccagtacaagaggaagctgatggatctctctcac
agggtgctgcaggtgctaatcaaacaggaaattcagaggaaaagtgggtatgctatccaa
gtggatgaggagcacctgagggtgcagctggacaccattcactctgaactaaatgccccc
acacagttcaagggtcgtttgaatgaattaatgtcccaaatccggatgcagaatcacttc
ggggctgcgagatcagaggagcgctacagtgttgatgcagacctgctcagggaaatcaaa
caacacttgaaacagcagcaggacggtttaagtcatttgatcagcgtcatcaaagatgac
ttggaagacatcaaactcatagagcacgggctgagtgacagtggacacatgaaaggaggc
attctgagctga
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