Pungitius pungitius (ninespine stickleback): 119226277
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Entry
119226277 CDS
T07626
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119226277 (taf1c)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
119226277 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
119226277
NCBI-ProteinID:
XP_037339952
LinkDB
All DBs
Position
18:14455933..14463136
Genome browser
AA seq
1059 aa
AA seq
DB search
MDYQFPQQLFPSHYTEGPPDLVLKHCAGNWGSYDRVLPQGSSGPPSSWTFTARHQAKGET
WRLTEPIPVPLLSPKSCFLLPLEPPNPLNFTEHMKNFYLDHCQDAFGFMGEMLSENLIQP
PQKRYTRKSVYGVRSALDMMKMGPRSSCSKSLAAFGALLYDVVPAVPTELLGSLLHEELM
EQRDSALFSEGATGGALAFVPFPQGGSEPQSGCLLYPGNPGLDRLNFHRVELQHSRGGSS
CVDVSSSDPFSFQLKGPVRQISCASLFNDCCVAVRSDHLCGVWRFSKQDAPRLLQVVNTR
EVATCVSVSPHILGEVLVASESGAVDLWHVGKGMQRVRHEDSNLYFNAKSLWRWGEFSAH
PRVMVYADRTGVELTDIRESPVSSHTLFRISNTSECRSGERLVLSTYLGDVHTFQHLVTT
QCSAYIIDERFPCIAMLKWDHMMKSPPMFCHVVCDSASSGSAVGGAGATKVLLGSQKSQE
ITLLQFLGGRAKATSSRGPPRALLRPKDSLQHLPVQIPHRLDLTTSRLSAPAAGLTCIPM
RAAREGGGDECICILQLTEAGDIFYHNLESELTEAAPPPAAEDAQTAAPTSGAAAVHQRP
MLVVSETLSDKNVIGPTQGPSGAKTLEEEQDVHSDSSQDSEPRHRGRFNAYFGLKVMVNS
DPELDRGIEVPDRRDDTEETGRVENTGGVENTGDGVSVSLGAAECRPPPKLSNEALVVWK
HWLQKLVQRNRKKGPARWRCQQHQAVPTEALLPSGSVARDPTEGARVQSLRGDLRACMAK
RALLLHAAVSAPLEAPPMVAVPGAVETEAWLDNISQRLTVSWQGEDAWLAWWREHLGLNR
EDKVKALKRKRRWEKDLRRAAGRRMDLSGSFTSSVSYQSELSDFSDTSGWSSVLSQGTWS
ENQERLSQADSSLEDRTPRATTPTTPPATQTCTPVAVPTTTPGDQQTTSNALSQTPRRDS
TPSNQRRPKRPADDYLHVLFAPQDEAPQHDGYFQGGESATHQSAPPPPRRAQSSALGNLW
LHLSQDATHSQPQTLSQSSRGRPGSSQTSQPKKKSRMGF
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggattaccagttcccacagcagcttttcccttcgcattacacagagggacccccggac
ttggtgctaaaacactgcgcaggtaactggggcagttatgaccgagtcctccctcagggc
agctcgggtcccccctccagctggacgtttacagccagacatcaggccaaaggggagaca
tggcgtctcacagagccgataccagttcccctcctgtccccgaaaagctgttttcttttg
cctttggagcctccaaatccactgaacttcacagaacatatgaagaacttctacttggac
cactgccaagatgccttcgggttcatgggggaaatgctgagcgagaatctcatccaacca
ccacaaaagagatacaccaggaagtcggtctacggtgtgagaagcgccctcgacatgatg
aaaatgggtccgcgctcgtcctgctccaagtccctggcggcatttggcgccctgctgtat
gacgtggtgcccgccgtgcccaccgagctgctgggctctctgctgcacgaggagctgatg
gagcaaagggacagcgcgctgttctccgagggggccacaggtggcgccctggccttcgtt
ccattccctcagggcggcagcgagccccagagtggctgcctcctctaccccggaaacccg
ggcctggaccgcctcaacttccacagagtggagctgcagcacagcagggggggttcctcc
tgtgtggacgtcagcagcagtgacccattcagcttccagctgaagggccccgtccgacag
atcagctgcgcctccctgttcaacgactgttgcgtcgctgtgcgctctgatcacctgtgt
ggagtctggaggttcagtaaacaggacgcgcctcgcctcctgcaggtagtcaacaccaga
gaggtcgcgacctgtgtcagcgtcagtccgcacatcttaggtgaagtcctggtggcgagt
gagagcggggcggtggacctctggcacgtaggcaaaggaatgcagagggtccggcacgaa
gacagtaacttgtacttcaacgccaagtcgttgtggcgatggggcgagttctctgcccac
ccgagagtgatggtgtatgcggacaggacgggagtggagctcacagacatccgggagagt
cccgtctcaagtcacaccctgtttcgtatcagcaacacctcagagtgtcgcagcggggag
aggcttgtactgtctacttacctgggagacgtccacaccttccagcacctcgtcactact
cagtgttcagcctacatcatagacgagcgattcccctgcattgccatgctcaagtgggat
catatgatgaagtccccacccatgttttgtcatgtagtttgtgattctgcctcctctggc
tcagcagtgggtggggctggggctaccaaggtgctactgggctcccaaaaatctcaggaa
atcacactgctgcagtttttgggaggcagagcgaaggccacctccagtcgaggtcctcct
cgtgcgcttctcagacccaaagacagtctgcaacaccttcctgtccagatccctcaccgc
ctggacctaactacaagcaggttgtctgcacctgctgcaggtctgacttgtattccaatg
agagcggcaagagagggcggtggggatgagtgcatctgtatcctccagctgacggaggca
ggggacatcttctaccataacctggagtcagagctgacggaggccgctccacctcctgca
gcagaagacgctcaaacagcagccccaacttcaggggcggcggcagtccaccagcggcct
atgctggtcgtatcggagacgttgagcgacaagaacgtgattggaccaacccagggcccg
tcaggggccaaaacactggaggaggagcaagatgtgcactctgactcctcccaggactcg
gagccccgacacaggggtcgcttcaatgcttactttggtctgaaggtcatggtcaacagt
gaccccgagctggatcgaggtattgaggtaccggatcgcagagatgacactgaggagacc
ggcagggtggagaacactggcggggtggagaacaccggtgacggggtctctgtcagcttg
ggtgccgcagagtgtcggcctccgccaaagctcagcaacgaggctctcgtcgtgtggaaa
cattggctccagaagttggtgcagaggaatcgcaagaaggggcccgcccgttggcgctgt
cagcagcaccaggcagtcccaaccgaggccctcctcccatcgggcagtgtggcgagggat
cccactgaaggggcccgagtgcagagcctgaggggcgacctgagagcgtgcatggccaag
cgagccctgctgctccacgctgcagtctccgcccccctggaggctccgcccatggtggca
gtacccggcgctgtggaaacagaagcctggctggacaatatcagccagcgtttgactgtg
tcctggcagggcgaggatgcgtggctggcatggtggagggagcatctgggtctgaaccgg
gaggacaaggtgaaggccctgaagagaaagaggaggtgggagaaggacttgaggagagct
gcgggccggcgcatggatctgtccgggagcttcacctcctcagtcagctaccagtcagag
ctgagcgacttctctgacacgtcgggctggtcctccgtcttgagccaggggacgtggtca
gagaaccaggagagactgtcccaggcagacagctctctggaggacaggactcccagagcc
accacacccaccacaccgcccgccacacaaacttgcacgccagttgccgtgccgacaacc
acgccaggtgaccagcagactaccagtaacgccctgtcccagacgccaagacgggattcc
acaccatccaatcagaggagaccgaagcgtccagcagacgactacctccacgttctgttt
gctccacaggatgaggccccgcagcacgatggttatttccagggaggggagagcgccacg
caccaatcggcaccaccaccgccgcgcagggcccagtcctccgccctgggcaacctctgg
ctgcacctgtcacaggacgccacccactctcagcctcagaccctctcccagagttcaagg
gggcgcccgggctcgtcacagacgtcgcagccaaagaagaagtctcggatgggattttga
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